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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0211900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0288) R2 : 0.00737
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.112 (0.0607) R2dN8 : 0.00952 R2N8 : 0.00737
σ : 0.543
deviance : 135.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.12 0.525 2.87 -0.304 0.105 -0.553 -0.306 1.15 0.0828 14.3 1 10 -- --
128.29 0.528 2.86 -0.265 0.0987 -0.476 -0.167 -- 0.0944 13.8 1.005 10 -- --
127.42 0.526 2.87 -0.307 0.104 -0.544 -- 1.01 0.082 13.5 1.007 10 -- --
128.38 0.528 2.86 -0.267 0.0977 -0.469 -- -- 0.092 13.1 1.032 10 -- --
127.97 0.527 2.88 -0.314 -- -0.504 -- 1.16 0.0768 -- 1.017 14 -- --
133.43 0.542 2.86 -0.22 0.0942 -- 0.175 -- 0.0864 6.49 -- -- -- --
133.47 0.541 2.86 -0.217 0.0973 -- -- -- 0.0862 7.45 -- -- -- --
128.93 0.529 2.87 -0.266 -- -0.43 -- -- 0.09 -- 1.011 10 -- --
130.17 0.531 2.86 -- 0.0978 -0.433 -- -- 0.124 13 1.1 8 -- --
133.97 0.541 2.87 -0.215 -- -- -- -- 0.0878 -- -- -- -- --
134.71 0.543 2.86 -- 0.0954 -- -- -- 0.11 7.6 -- -- -- --
130.72 0.533 2.86 -- -- -0.397 -- -- 0.124 -- 1.093 8 -- --
135.19 0.543 2.86 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.91 atmosphere 1005.0 90 > th dose dependent rect. 1 2
3 117.09 atmosphere 1005.0 90 > th dose independent rect. 1 2
4 117.21 wind 1.0 30 > th dose dependent rect. 2 1
5 117.31 humidity 90.0 90 < th dose independent rect. 1 2
11 118.92 temperature 30.0 10 < th dose dependent rect. 2 1
12 118.98 wind 9.0 10 < th dose independent rect. 3 23
17 119.37 temperature 25.0 10 < th dose independent rect. 2 1
21 119.40 wind 1.0 30 > th dose independent rect. 2 1
22 119.43 wind 9.0 10 < th dose independent rect. 2 1
23 119.43 temperature 10.0 10 > th dose independent rect. 2 1
26 119.43 humidity 50.0 10 > th dose independent rect. 2 1
30 119.43 atmosphere 1010.0 10 < th dose independent rect. 2 1
32 119.43 radiation 1.0 10 < th dose independent rect. 2 1
37 119.43 precipitation 0.1 10 < th dose independent rect. 2 1
38 119.43 temperature 10.0 10 > th dose independent rect. 3 23
39 119.43 radiation 1.0 10 < th dose dependent rect. 2 1
44 119.43 precipitation 0.1 10 < th dose dependent rect. 2 1
48 119.65 temperature 10.0 10 > th dose dependent rect. 2 1
49 119.67 atmosphere 1015.0 10 < th dose dependent rect. 2 1
72 119.74 humidity 50.0 10 > th dose dependent rect. 2 1
92 119.90 wind 3.0 30 < th dose independent rect. 2 1
93 119.91 wind 9.0 30 < th dose dependent rect. 2 1
96 119.94 wind 5.0 30 < th dose dependent rect. 2 1
111 120.08 precipitation 0.1 10 < th dose independent rect. 3 23
112 120.08 precipitation 0.1 10 < th dose dependent rect. 3 23
118 120.28 atmosphere 995.0 10 > th dose independent rect. 3 23
145 121.99 temperature 30.0 30 < th dose independent rect. 3 23
180 122.54 wind 9.0 1440 < th dose independent rect. 3 1
181 122.54 temperature 10.0 1440 > th dose independent rect. 3 1
184 122.54 temperature 30.0 1440 < th dose independent rect. 3 1
188 122.54 humidity 50.0 1440 > th dose independent rect. 3 1
197 122.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
198 122.54 radiation 1.0 1440 < th dose independent rect. 3 1
218 122.54 temperature 10.0 1440 > th dose independent rect. 4 23
221 122.54 radiation 1.0 1440 < th dose dependent rect. 3 1
270 123.80 temperature 10.0 30 > th dose dependent rect. 3 22
280 124.12 wind 1.0 10 > th dose independent rect. 3 22
314 124.39 humidity 50.0 90 > th dose independent rect. 3 22
332 124.59 atmosphere 1015.0 90 < th dose independent rect. 3 22
334 124.61 atmosphere 995.0 30 > th dose dependent rect. 1 15
437 124.97 humidity 90.0 90 < th dose dependent rect. 1 1
449 125.15 wind 9.0 90 < th dose dependent rect. 3 22
451 125.17 wind 1.0 10 < th dose independent rect. 9 18
469 125.47 wind 1.0 90 > th dose independent rect. 3 22
527 125.80 atmosphere 1005.0 30 > th dose independent rect. 1 15
569 126.34 humidity 90.0 10 < th dose dependent rect. 2 1
616 126.56 temperature 10.0 10 > th dose dependent rect. 16 9
630 126.66 temperature 25.0 10 < th dose independent rect. 1 20
642 126.74 temperature 25.0 10 < th dose independent rect. 9 20
648 126.78 atmosphere 1015.0 1440 < th dose independent rect. 3 1
660 126.83 temperature 25.0 10 < th dose independent rect. 1 16
669 126.87 temperature 25.0 10 < th dose independent rect. 12 17
673 126.89 temperature 25.0 10 < th dose independent rect. 18 23
682 126.93 precipitation 0.1 10 < th dose independent rect. 1 15
683 126.93 precipitation 0.1 10 < th dose dependent rect. 1 15
684 126.95 humidity 50.0 30 > th dose independent rect. 1 15
720 127.12 wind 1.0 10 > th dose independent no NA NA
726 127.14 precipitation 0.1 10 < th dose independent rect. 16 9
727 127.14 atmosphere 995.0 10 > th dose independent rect. 1 15
728 127.14 precipitation 0.1 10 < th dose dependent rect. 16 9
729 127.15 temperature 10.0 10 > th dose independent rect. 16 9
730 127.15 radiation 40.0 10 < th dose independent rect. 16 9
731 127.15 temperature 10.0 10 > th dose independent rect. 1 15
733 127.15 atmosphere 1015.0 10 < th dose independent rect. 1 15
737 127.17 wind 1.0 10 > th dose independent sin 14 NA
743 127.17 atmosphere 995.0 10 > th dose independent rect. 16 9
783 127.27 radiation 40.0 90 < th dose independent rect. 11 16
789 127.29 wind 9.0 30 < th dose independent rect. 16 9
795 127.31 temperature 10.0 1440 > th dose independent rect. 17 9
799 127.31 radiation 30.0 1440 < th dose independent rect. 17 9
805 127.31 temperature 10.0 1440 > th dose independent rect. 2 15
826 127.36 humidity 50.0 10 > th dose independent rect. 16 9
832 127.37 wind 1.0 10 > th dose independent rect. 20 23
833 127.37 temperature 25.0 10 > th dose independent rect. 12 23
834 127.37 humidity 50.0 30 > th dose dependent rect. 16 9
845 127.40 temperature 25.0 10 > th dose independent rect. 16 17
865 127.46 wind 1.0 10 > th dose independent rect. 20 13
866 127.46 temperature 25.0 10 > th dose independent rect. 16 19
875 127.50 radiation 40.0 10 < th dose dependent rect. 16 9
877 127.51 wind 1.0 10 > th dose independent rect. 16 17
880 127.52 temperature 25.0 10 < th dose independent rect. 18 11
887 127.53 wind 9.0 30 > th dose independent rect. 1 10
895 127.53 wind 9.0 30 > th dose dependent rect. 1 10
932 127.57 temperature 30.0 10 < th dose independent rect. 16 9
983 127.63 wind 1.0 10 > th dose independent rect. 16 9