BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0197500 Os02g0197500|AK105298
(195 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0197500 Regulator of chromosome condensation/beta-lact... 335 9e-93
Os08g0430700 Similar to UVB-resistance protein-like 92 3e-19
Os04g0435700 Similar to UVB-resistance protein UVR8 66 1e-11
Os02g0554100 Similar to UVB-resistance protein UVR8 66 1e-11
Os11g0545800 Regulator of chromosome condensation/beta-lact... 64 8e-11
>Os02g0197500 Regulator of chromosome condensation/beta-lactamase-inhibitor
protein II domain containing protein
Length = 195
Score = 335 bits (860), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 181/195 (92%), Positives = 181/195 (92%)
Query: 1 MRPLRRTAASASGFLRRRLLSELAGNGAPLPRVGAVYAFGDNSHGAAGQPAPAADXXXXX 60
MRPLRRTAASASGFLRRRLLSELAGNGAPLPRVGAVYAFGDNSHGAAGQPAPAAD
Sbjct: 1 MRPLRRTAASASGFLRRRLLSELAGNGAPLPRVGAVYAFGDNSHGAAGQPAPAADVYVPT 60
Query: 61 XXXXXXXXXAAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLE 120
AAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLE
Sbjct: 61 PVPSLPTSVAAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLE 120
Query: 121 NVQVRAVSACGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANYDIVKV 180
NVQVRAVSACGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANYDIVKV
Sbjct: 121 NVQVRAVSACGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANYDIVKV 180
Query: 181 LTFSLKLSSRMFAPL 195
LTFSLKLSSRMFAPL
Sbjct: 181 LTFSLKLSSRMFAPL 195
>Os08g0430700 Similar to UVB-resistance protein-like
Length = 395
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 1 MRPLRRTAASASGFLRRRLLSELAGNGAP---LPRVGAVYAFGDNSHGAAGQPAPAADXX 57
R LRR G + + ++A G L + G V+ +G QP P D
Sbjct: 140 TRALRRDIPIPQGCAPKLKVRQVAAGGTHSVVLTQDGHVWTWG--------QPWPPGDIK 191
Query: 58 XXXX--XXXXXXXXAAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEK 115
+A G +H+LA++ +G +WAWG N+ GQLG G PR S+P +
Sbjct: 192 QISTPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPR---SQPIR 248
Query: 116 VRGLENVQVRAVSACGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANY 175
V GL ++ + ++A G S A+ +G ++ WGR + G+LG G D VP +VE LA
Sbjct: 249 VEGLSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDDKSSHMVPQKVELLAGE 308
Query: 176 DIVKVL-----TFSLKLSSRMFA 193
DI++V + +L RMF+
Sbjct: 309 DIIQVSCGGTHSVALTRDGRMFS 331
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Query: 7 TAASASGFLRRRLLSELAGNGAPLPRVGAVYAFGDNSHGAAGQPAPAADXXXXXXXXXXX 66
T G ++++ A + L G ++A+G+N +G G
Sbjct: 195 TPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSQPIRVEGLSD 254
Query: 67 XXXAAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRA 126
+AAG +HS A++ EGEV+AWGR + G+LG G +++ P+KV L +
Sbjct: 255 LSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDD--KSSHMVPQKVELLAGEDIIQ 312
Query: 127 VSACGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIV 161
VS G S A+ DG ++ +GR G+LG G+ +
Sbjct: 313 VSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVT 347
>Os04g0435700 Similar to UVB-resistance protein UVR8
Length = 453
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 72 VAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRAVSACG 131
+A G H LAV+ GEV +WGRN GQLG G P+K++ E V V+ ++A
Sbjct: 134 IACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLL---PQKIQSFEGVCVKMIAAGA 190
Query: 132 VVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANYDIVKV 180
+AA+ DG L+ WG + G LGLG D + VP +V ++ +V +
Sbjct: 191 EHTAAVTEDGDLYGWGWGRYGNLGLG-DRNDRLVPEKVSSVEGEKMVLI 238
>Os02g0554100 Similar to UVB-resistance protein UVR8
Length = 453
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 72 VAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSK--PEKVRGLENVQVRAVSA 129
+A G H LAV+ G V +WGRN GQLG G NT P+K++ E V+V+ ++A
Sbjct: 139 IACGDSHCLAVTVAGHVHSWGRNQNGQLGLG-----NTEDSLLPQKIQAFEGVRVKMIAA 193
Query: 130 CGVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVEAAVPSRVEALANYDIVKV 180
+AA+ DG L+ WG + G LGLG D + +P +V ++ +V V
Sbjct: 194 GAEHTAAVTEDGDLYGWGWGRYGNLGLG-DRDDRLIPEKVSSVNGQKMVLV 243
>Os11g0545800 Regulator of chromosome condensation/beta-lactamase-inhibitor
protein II domain containing protein
Length = 400
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 30 LPRVGAVYAFGDNSHGAAGQPAPAADXXXXXXXXXXXXXXAAVAAGHYHSLAVSAEGEVW 89
L G V+A G N G G + V+AG++HS AV+A+G+++
Sbjct: 63 LTESGRVFAAGLNDFGQLGIGSSVTHSLEPIEVSGFDEKVVEVSAGNHHSCAVTADGKLF 122
Query: 90 AWGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRAVSACGVVSAAIGCDGSLWVWGRS 149
AWGRN GQLG G A + S P KV L + +V+ V+ S A +G + WG +
Sbjct: 123 AWGRNSSGQLGLGKRAGK-VVSTPRKVDCLADARVKMVALGSEHSIATTEEGEVLSWGAA 181
Query: 150 KRGQLG-------LGKDIVEAAVPSRVEALANYDIVKV 180
G+LG LG I + R+ + N D VK+
Sbjct: 182 GAGRLGHGHKTSILGFSITTSEYTPRL--IKNLDGVKI 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,772,322
Number of extensions: 285864
Number of successful extensions: 1096
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 10
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)