Os08g0430700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UVB-resistance protein-like.
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Os08g0430700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UVB-resistance protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.03 | 0.388 | 10.1 | -1.17 | 1.16 | -0.508 | 0.597 | -0.147 | -0.463 | 16.2 | 24.8 | 252 | -- | -- |
| 68.1 | 0.384 | 10.1 | -1.21 | 1.14 | -0.523 | 0.639 | -- | -0.478 | 16.1 | 24.8 | 252 | -- | -- |
| 68.84 | 0.386 | 10.1 | -1.09 | 1.15 | -0.507 | -- | -0.391 | -0.443 | 16.1 | 24.8 | 252 | -- | -- |
| 69.32 | 0.388 | 10.1 | -1.21 | 1.15 | -0.528 | -- | -- | -0.482 | 16.1 | 24.79 | 251 | -- | -- |
| 113.97 | 0.497 | 10.1 | -1.42 | -- | -1.01 | -- | 0.466 | -0.626 | -- | 25.8 | 189 | -- | -- |
| 81.84 | 0.424 | 10 | -1.05 | 1.47 | -- | 0.858 | -- | -0.218 | 16.3 | -- | -- | -- | -- |
| 83.88 | 0.429 | 10 | -1.04 | 1.48 | -- | -- | -- | -0.213 | 16.3 | -- | -- | -- | -- |
| 112.09 | 0.493 | 10.1 | -1.4 | -- | -1.06 | -- | -- | -0.625 | -- | 25.8 | 217 | -- | -- |
| 106.02 | 0.48 | 10 | -- | 1.27 | -0.346 | -- | -- | -0.26 | 16.2 | 24.89 | 228 | -- | -- |
| 201.74 | 0.664 | 10 | -1.1 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 112.54 | 0.496 | 9.99 | -- | 1.5 | -- | -- | -- | -0.097 | 16.3 | -- | -- | -- | -- |
| 161.22 | 0.591 | 10.1 | -- | -- | -0.928 | -- | -- | -0.402 | -- | 25.8 | 187 | -- | -- |
| 233.76 | 0.714 | 9.98 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.13 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 3 | 57.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 14 | 58.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 16 | 58.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 24 | 58.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 48 | 59.00 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 51 | 59.11 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 62 | 59.50 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 74 | 59.70 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 95 | 60.10 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 133 | 60.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 169 | 61.05 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 248 | 61.77 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 308 | 62.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 338 | 62.26 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 368 | 62.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 609 | 63.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 712 | 64.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 717 | 64.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 723 | 64.43 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 757 | 64.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 806 | 64.82 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 17 |