Os02g0197500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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Os02g0197500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.23 | 0.275 | 9.1 | 0.672 | 0.314 | -0.659 | -0.0831 | -2.41 | -0.0894 | 6.25 | 64.59 | 4690 | -- | -- |
| 42.19 | 0.303 | 9.1 | 0.741 | 0.325 | -0.723 | -0.0937 | -- | -0.0874 | 6.23 | 65 | 4835 | -- | -- |
| 34.19 | 0.272 | 9.1 | 0.679 | 0.327 | -0.659 | -- | -2.36 | -0.091 | 6.47 | 64.99 | 4780 | -- | -- |
| 41.86 | 0.301 | 9.11 | 0.763 | 0.315 | -0.877 | -- | -- | -0.105 | 7.17 | 65 | 5305 | -- | -- |
| 38.39 | 0.289 | 9.13 | 0.789 | -- | -0.713 | -- | -2.44 | -0.133 | -- | 65.02 | 5890 | -- | -- |
| 53 | 0.341 | 9.13 | 0.72 | 0.276 | -- | -0.405 | -- | -0.175 | 5.54 | -- | -- | -- | -- |
| 53.16 | 0.341 | 9.12 | 0.72 | 0.282 | -- | -- | -- | -0.172 | 6.39 | -- | -- | -- | -- |
| 46.29 | 0.317 | 9.11 | 0.794 | -- | -0.842 | -- | -- | -0.0907 | -- | 65.3 | 5555 | -- | -- |
| 57.17 | 0.352 | 9.14 | -- | 0.367 | -0.808 | -- | -- | -0.235 | 6.9 | 67 | 5185 | -- | -- |
| 57.29 | 0.354 | 9.13 | 0.727 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 66.82 | 0.382 | 9.14 | -- | 0.292 | -- | -- | -- | -0.253 | 6.25 | -- | -- | -- | -- |
| 60.71 | 0.363 | 9.1 | -- | -- | -0.75 | -- | -- | -0.0523 | -- | 62.97 | 4190 | -- | -- |
| 71.24 | 0.394 | 9.15 | -- | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 2 | 32.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 3 | 32.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 4 | 32.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 11 | 32.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 15 | 32.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 19 | 32.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 47 | 33.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 52 | 33.22 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 65 | 33.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 67 | 33.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 68 | 33.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 69 | 33.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 73 | 33.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 74 | 33.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 88 | 33.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 14 |
| 92 | 33.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 94 | 33.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 11 |
| 100 | 34.02 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 21 | NA |
| 188 | 34.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 191 | 34.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 203 | 34.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 209 | 34.62 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 226 | 34.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 236 | 34.78 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 241 | 34.84 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 250 | 34.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 267 | 34.93 | humidity | 60.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 318 | 35.15 | humidity | 60.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 325 | 35.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 385 | 35.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 388 | 35.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 390 | 35.59 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 394 | 35.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 407 | 35.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 408 | 35.64 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 411 | 35.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 475 | 35.75 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 491 | 35.80 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 492 | 35.80 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 497 | 35.80 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 503 | 35.81 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 524 | 35.85 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 21 | NA |
| 528 | 35.87 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 532 | 35.88 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 17 |
| 534 | 35.89 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 538 | 35.89 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 539 | 35.89 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 554 | 35.91 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 15 |
| 563 | 35.92 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 11 |
| 572 | 35.93 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 576 | 35.94 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 600 | 36.00 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 632 | 36.09 | humidity | 60.0 | 4320 | > th | dose independent | sin | 19 | NA |
| 660 | 36.11 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 676 | 36.13 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 695 | 36.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 712 | 36.17 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 724 | 36.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 727 | 36.19 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 729 | 36.19 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 10 |
| 748 | 36.20 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 789 | 36.25 | humidity | 60.0 | 4320 | > th | dose independent | no | NA | NA |
| 790 | 36.25 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 806 | 36.25 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 24 | 20 |
| 812 | 36.25 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 22 | 21 |
| 859 | 36.26 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 916 | 36.31 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 994 | 36.38 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 17 | 3 |