Os04g0435700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UVB-resistance protein UVR8.
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Os04g0435700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UVB-resistance protein UVR8.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.46 | 0.185 | 13.6 | -1.16 | 0.564 | 0.545 | 0.275 | -1.12 | -0.00721 | 3.04 | 25.66 | 5730 | -- | -- |
| 16.02 | 0.186 | 13.6 | -0.898 | 0.561 | 0.435 | 0.284 | -- | -0.0263 | 3.07 | 22.81 | 7179 | -- | -- |
| 15.69 | 0.184 | 13.6 | -1.19 | 0.562 | 0.559 | -- | -1.25 | -0.00515 | 3.02 | 26.07 | 5698 | -- | -- |
| 16.25 | 0.188 | 13.6 | -0.888 | 0.559 | 0.425 | -- | -- | -0.0267 | 3.06 | 23 | 7145 | -- | -- |
| 33.06 | 0.268 | 13.6 | -1.18 | -- | 0.606 | -- | -1.28 | 0.0408 | -- | 26.68 | 5518 | -- | -- |
| 23.31 | 0.226 | 13.6 | -0.684 | 0.588 | -- | 0.338 | -- | 0.111 | 3.06 | -- | -- | -- | -- |
| 23.69 | 0.228 | 13.6 | -0.691 | 0.589 | -- | -- | -- | 0.109 | 3.05 | -- | -- | -- | -- |
| 33.31 | 0.269 | 13.6 | -0.872 | -- | 0.487 | -- | -- | 0.00106 | -- | 24.69 | 6938 | -- | -- |
| 33.61 | 0.27 | 13.6 | -- | 0.527 | 0.262 | -- | -- | 0.128 | 2.7 | 27.31 | 7018 | -- | -- |
| 43.55 | 0.308 | 13.6 | -0.666 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 36.27 | 0.282 | 13.6 | -- | 0.575 | -- | -- | -- | 0.186 | 3.04 | -- | -- | -- | -- |
| 50.35 | 0.33 | 13.6 | -- | -- | 0.299 | -- | -- | 0.167 | -- | 28.51 | 6957 | -- | -- |
| 55.24 | 0.347 | 13.6 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 19 | 15.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 13 |
| 20 | 15.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 21 | 15.90 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |
| 40 | 15.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 50 | 15.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 65 | 15.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 75 | 15.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 214 | 16.01 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 216 | 16.01 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 231 | 16.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 20 |
| 272 | 16.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 292 | 16.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 312 | 16.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 473 | 16.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 518 | 16.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 569 | 16.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 584 | 16.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 604 | 16.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 621 | 16.23 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 652 | 16.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 677 | 16.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 678 | 16.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 684 | 16.26 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 743 | 16.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 9 |
| 757 | 16.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 779 | 16.32 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 816 | 16.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 820 | 16.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 842 | 16.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 867 | 16.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 882 | 16.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 961 | 16.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 966 | 16.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 979 | 16.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |