Os02g0554100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UVB-resistance protein UVR8.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0554100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to UVB-resistance protein UVR8.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.6 | 0.642 | 11.2 | -2.02 | 0.493 | 2.26 | 1.14 | -5.68 | -0.476 | 3.33 | 24.08 | 1239 | -- | -- |
| 200.67 | 0.66 | 11.1 | -0.524 | 0.456 | 1.74 | 1.15 | -- | -0.158 | 3.15 | 23.04 | 1224 | -- | -- |
| 190.54 | 0.643 | 11.2 | -1.94 | 0.5 | 2.25 | -- | -5.3 | -0.444 | 3.54 | 24.22 | 1240 | -- | -- |
| 201.87 | 0.662 | 11.1 | -0.515 | 0.499 | 1.75 | -- | -- | -0.161 | 3.3 | 22.99 | 1226 | -- | -- |
| 203.57 | 0.665 | 11.2 | -1.92 | -- | 2.37 | -- | -5.2 | -0.443 | -- | 24.1 | 1213 | -- | -- |
| 299.39 | 0.811 | 11 | 0.0446 | 0.797 | -- | 1.05 | -- | 0.197 | 2.68 | -- | -- | -- | -- |
| 303.28 | 0.816 | 11 | 0.0184 | 0.8 | -- | -- | -- | 0.191 | 2.67 | -- | -- | -- | -- |
| 215.74 | 0.684 | 11.1 | -0.569 | -- | 1.89 | -- | -- | -0.127 | -- | 23.51 | 1198 | -- | -- |
| 209.12 | 0.674 | 11 | -- | 0.522 | 1.61 | -- | -- | -0.0418 | 3.41 | 23.45 | 1217 | -- | -- |
| 340.6 | 0.862 | 11 | 0.0525 | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
| 303.29 | 0.815 | 11 | -- | 0.8 | -- | -- | -- | 0.189 | 2.67 | -- | -- | -- | -- |
| 223.41 | 0.696 | 11 | -- | -- | 1.78 | -- | -- | -0.0279 | -- | 23.74 | 1187 | -- | -- |
| 340.67 | 0.862 | 11 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 9 | 192.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 18 | 193.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 100 | 194.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 177 | 195.60 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 355 | 200.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 416 | 202.10 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 423 | 202.18 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 425 | 202.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 435 | 202.56 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 450 | 202.82 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 501 | 203.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 504 | 203.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 527 | 203.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 554 | 204.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 562 | 204.15 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 595 | 204.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 615 | 204.44 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 622 | 204.47 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 631 | 204.51 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 672 | 204.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 673 | 204.66 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 677 | 204.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 756 | 205.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 812 | 205.29 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 839 | 205.45 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 852 | 205.51 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 856 | 205.52 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 857 | 205.52 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 867 | 205.59 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 906 | 205.77 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 924 | 205.83 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 992 | 206.12 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 21 |