BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0159800 Os02g0159800|AK119764
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0159800 Cyclin-like F-box domain containing protein 763 0.0
Os08g0410266 Cyclin-like F-box domain containing protein 154 1e-37
Os06g0148600 Protein of unknown function DUF295 family protein 96 5e-20
Os01g0530500 Protein of unknown function DUF295 family protein 95 1e-19
Os02g0129200 94 2e-19
Os11g0594600 Protein of unknown function DUF295 family protein 88 1e-17
Os06g0148700 Cyclin-like F-box domain containing protein 86 6e-17
Os11g0624500 Protein of unknown function DUF295 family protein 82 1e-15
Os11g0594500 70 2e-12
>Os02g0159800 Cyclin-like F-box domain containing protein
Length = 415
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/415 (92%), Positives = 385/415 (92%)
Query: 1 MVQRPRKRARTTSPCSPPASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREH 60
MVQRPRKRARTTSPCSPPASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREH
Sbjct: 1 MVQRPRKRARTTSPCSPPASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREH 60
Query: 61 RAPPPLSPCLCFADGSFRGFFPEDARPFRLPAAAGWLGSCGEWLLYRRHDDGAYLLVDPF 120
RAPPPLSPCLCFADGSFRGFFPEDARPFRLPAAAGWLGSCGEWLLYRRHDDGAYLLVDPF
Sbjct: 61 RAPPPLSPCLCFADGSFRGFFPEDARPFRLPAAAGWLGSCGEWLLYRRHDDGAYLLVDPF 120
Query: 121 SKAAAMAPLPSVSRLHVRHDPIVAVDERDLRWCRPTWLPRENTGEPQAAASLLKLXXXXX 180
SKAAAMAPLPSVSRLHVRHDPIVAVDERDLRWCRPTWLPRENTGEPQAAASLLKL
Sbjct: 121 SKAAAMAPLPSVSRLHVRHDPIVAVDERDLRWCRPTWLPRENTGEPQAAASLLKLAVSPA 180
Query: 181 XXXXXXXXGEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAVDHNEDLLAVT 240
GEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAVDHNEDLLAVT
Sbjct: 181 ADVVAAVVGEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAVDHNEDLLAVT 240
Query: 241 LAADGEPPAVSRIDRVINGKPPGAAALLRVTLHYLVDSGGELLLVRREVQRSSMVRTQPW 300
LAADGEPPAVSRIDRVINGKPPGAAALLRVTLHYLVDSGGELLLVRREVQRSSMVRTQPW
Sbjct: 241 LAADGEPPAVSRIDRVINGKPPGAAALLRVTLHYLVDSGGELLLVRREVQRSSMVRTQPW 300
Query: 301 QHTAELQXXXXXXXXXXXXXXXXXVKTIGDESGGRALFVGRWCSRAVRVAGDRWADQVFF 360
QHTAELQ VKTIGDESGGRALFVGRWCSRAVRVAGDRWADQVFF
Sbjct: 301 QHTAELQDRFAVFRADFRRSRWRRVKTIGDESGGRALFVGRWCSRAVRVAGDRWADQVFF 360
Query: 361 LEDGTGDEWHTRAQRCSLRGSTFGCVRPNELLPLMTTADGQDLDATWIFPREAKL 415
LEDGTGDEWHTRAQRCSLRGSTFGCVRPNELLPLMTTADGQDLDATWIFPREAKL
Sbjct: 361 LEDGTGDEWHTRAQRCSLRGSTFGCVRPNELLPLMTTADGQDLDATWIFPREAKL 415
>Os08g0410266 Cyclin-like F-box domain containing protein
Length = 638
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 187/369 (50%), Gaps = 42/369 (11%)
Query: 21 SWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREHRAPPPLSPCLCFADGSFRGF 80
SW D+P D+A +VLR LP+ DR CF A C WR +AR P PL L DG+F +
Sbjct: 19 SWADIPRDLAVQVLRFLPAQVDRACFAAVCPQWRGAARNALLPAPLP-LLALPDGAF--Y 75
Query: 81 FPEDARPFRLPAA--AGW-LGSCGEWLLYRRHDDGAYLLVDPFSKAAAMAPLPSVSRLHV 137
+PFR P A AG+ +CG WL++ HDDG +L VDPF A A LP++SR+ +
Sbjct: 76 CLPYGKPFRFPRAGCAGYKTAACGRWLVFP-HDDGCFL-VDPF--AGATVTLPALSRVRL 131
Query: 138 RHDPIVA------VDERD----LRWCRPTWLPRENTGEPQAAASLLKLXXXXXXXXXXXX 187
R VA + R+ + + TW+ + + + LL
Sbjct: 132 RPPNAVASYVNVGIAGRNAHVSMFYPHATWMHIKTSDKMPINKLLLCSQNLVAAFIGSSL 191
Query: 188 XGEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAVDHNEDLLAVTLAADGEP 247
GR+ ++ VC+PGA +WSV D + +D AFY+GKLYA+ H+E+LL V ++ D
Sbjct: 192 ANAGRNSQILVCQPGASSWSVRAYDKCKLFEDMAFYRGKLYALAHDENLLVVNISQDPNT 251
Query: 248 --PAVSRIDRVINGKPPGAAALLRVTLH---------YLVDSGGELLLVRREVQRSSMVR 296
P +S+I +VI G P ++ L+ YLV+S G LL+VRR+V + +
Sbjct: 252 GDPQISQIGQVIKGDPTWSSVLITDDDDTSTTDKKKLYLVESCGVLLMVRRKVCCRVVGK 311
Query: 297 T-QPWQHTAELQXXXXXXXXXXXXXXXXXVKTIGDESGGRALFVGRWCSRAVRVAGDRW- 354
T P Q+ E+ V T+G + + +F+GR CS+AV +
Sbjct: 312 TVVPGQNEFEV------FKADLENSRWVNVTTLGVD---QMVFLGRPCSKAVSASQYGMP 362
Query: 355 ADQVFFLED 363
DQ+FFL+D
Sbjct: 363 NDQIFFLDD 371
>Os06g0148600 Protein of unknown function DUF295 family protein
Length = 393
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 167/423 (39%), Gaps = 62/423 (14%)
Query: 19 ASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREHRAPPPLSPCLCFADGSFR 78
+SSW DL +DI G VLRRLPS ADR+ A CR WR++A+ PPP P L DG+F
Sbjct: 7 SSSWADLQMDILGLVLRRLPSLADRVRLRAVCRPWRSNAQLLTLPPPF-PWLNLLDGTFL 65
Query: 79 GFFPEDARPFRLPAAAGWLGSCGEWLLYRRHDDGAYLLVDPFSKAAAMAPLPSVSRL--H 136
+ LP A GS WL DDG L+ +PFSKA LP ++R+ H
Sbjct: 66 SISDGEIHRMPLPDDASCYGSIDNWLFLTDSDDGCSLM-NPFSKATLQ--LPKLARIWHH 122
Query: 137 VRHDPIVAVDERDLRWCRPTWLPRENTGEPQAAASLLKLXXXXXXXXXXXXXGEGRHGKL 196
R + A + P LP + + + A + RH +
Sbjct: 123 ERGNAYNACTRLFYKLAVP--LPLDLSSDSLVAVLM---------------NDPLRHSVV 165
Query: 197 AVCRPGAPAWSVSGGDGWRRIK----DTAFYQGKLYAVDHNEDLLAVTLAADGEPPAVSR 252
+ S D R IK D AF GKLYA+ + E P V
Sbjct: 166 CIVHRSISTDSFRFHD--RPIKNNFYDIAFCGGKLYALSCGKLFTVEMSEVHIEKPKVPH 223
Query: 253 IDRVINGKP------PGAAALLRVTLHYLVDSGGELLLVRREVQRSSMVRTQP------W 300
++ ++ P P + VT YLV SGG LL V R V V P +
Sbjct: 224 VECIVEDFPTESHSQPCPENHICVTWPYLVASGGRLLNVIRLVG----VPFPPEDDDDIF 279
Query: 301 QHTAELQXXXXXXXXXXXXXXXXXVKTIGDESGGRALFVGRWCSRAVRVAGDRWA--DQV 358
+ + V+++GD+ ALFVGR S+++ A A D +
Sbjct: 280 KDSLTFSFEVYEADLNTGSRMWRRVESLGDQ----ALFVGRHYSKSLSAAEYVGAQEDCI 335
Query: 359 FFLEDGTGDEWHTRAQRCSLRGSTFGCVRPNELLPLMTTADGQDL------DATWIFPRE 412
+F+ D + R+ L + +R + PL+ L TW FP +
Sbjct: 336 YFMCDD-----YFRSDEDPLCDAGIYNMRSGVITPLLQENTAPRLHPTGEGHPTWFFPAD 390
Query: 413 AKL 415
+
Sbjct: 391 GAM 393
>Os01g0530500 Protein of unknown function DUF295 family protein
Length = 265
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 189 GEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAV-DHNEDLLAVTLAADGEP 247
G+G ++ VC+PG +WSV D R +D AFYQGKLYA+ + +EDLL V ++ D
Sbjct: 27 GDGHISQILVCKPGGLSWSVRAYDMVRNFQDMAFYQGKLYAIANDDEDLLVVNISQDQST 86
Query: 248 --PAVSRIDRVINGKP-------PGAAALLRVTLHYLVDSGGELLLVRREV----QRSSM 294
P VS+I + I G+P G +L YLV+S G LL++RR++ +++S
Sbjct: 87 GDPQVSKIGQAIKGEPFHSVWHEFGTMDILANKKLYLVESHGSLLMIRRKIWCWSKQASD 146
Query: 295 VRTQPWQHTAELQXXXXXXXXXXXXXXXXXVKTIGDESGGRALFVGRWCSRAVRVAGDRW 354
+ + + T+GDE + LF+GR CSRA+ V+
Sbjct: 147 TDPEASRPIVAGPNEFEVFKADFEQSRWVKMTTLGDE---QVLFLGRRCSRAMSVSQYGM 203
Query: 355 A-DQVFFLED 363
+ DQ+FFL+D
Sbjct: 204 SGDQIFFLDD 213
>Os02g0129200
Length = 407
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 133/314 (42%), Gaps = 58/314 (18%)
Query: 4 RPRKRARTTSPCSPPASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREHRA- 62
RP KR R + + SW DLP++IAGE+L R+PS+ADR F + CR WR +A E
Sbjct: 9 RPTKRPRAAAAPPAWSRSWSDLPVEIAGEILGRVPSFADRARFSSACRQWRLAAAELHGG 68
Query: 63 --PPPLSPCLCFADGSFRGFFPEDARPFRLPAAAGWLGSCGEWLLYRRH---------DD 111
PPPL + G+F P R + + L G WLL+ R
Sbjct: 69 ALPPPLPWLVSCYKGAFDS-LPYGDRHYLALDSPACLACDGGWLLFDRRAAAAVAGGGGG 127
Query: 112 GAYLLVDPFSKAAAMAPLPSVSRLHVRHDPIVAVDERDLRWCRPTWLPRENTGEPQAAAS 171
G YLL P SKAA LP +G P A A
Sbjct: 128 GGYLLKKPISKAAME-------------------------------LPGSLSGPPAATAE 156
Query: 172 L----LKLXXXXXXXXXXXXXGEGRHGKLAVCRPG-APAWSVS---GGDGWR--RIKDTA 221
+ L + G G +A+CRPG +P+WS GG + ++D A
Sbjct: 157 MKICKLVVMSRDLVAAIVSTSGGGGGRAVALCRPGTSPSWSAHHPPGGADHQLGDLRDIA 216
Query: 222 FYQGKLYAVDHNEDLLAVTL-AADGEPPAVSRIDRVI-NGKPPGAAALLRVTLHYLVDS- 278
+ GKLYA+ + +L + L A DGEP S + + + PP H+LV S
Sbjct: 217 VHGGKLYALHGHGNLCSYDLIAGDGEPKVSSCVHHIAGDALPPNKLPEEHDAGHHLVPSA 276
Query: 279 -GGELLLVRREVQR 291
GGELLLVR R
Sbjct: 277 TGGELLLVRHLYSR 290
>Os11g0594600 Protein of unknown function DUF295 family protein
Length = 416
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 21 SWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREHRAPPPLSPCLCFADGSFRGF 80
SW D+P DI G V+ RLPS DR + C++WR +AR HR PPPL L ++ +F GF
Sbjct: 16 SWADIPADIIGVVVGRLPSVEDRARLRSVCQAWRAAARLHRPPPPLPL-LVLSNLAFSGF 74
Query: 81 FPEDA----RPFRLP-----AAAGWL---GSCGEWLLYRRHD------DGAYLLVDPFSK 122
+ A R LP AAAG L GSC WL R DGA LV+PFS+
Sbjct: 75 CVDGAMSETRRIPLPVEVVAAAAGDLRCVGSCEGWLAVVRQKKARYLGDGACFLVNPFSR 134
Query: 123 AAAMAPLPSVSR----LHVRHDPIV----AVD------ERDLRWCRPTWLPRENTGEPQA 168
P P VS ++ R PI+ VD + + +C+ +G
Sbjct: 135 EVVNLPPPFVSTHLVDVYTRSLPIINGSGVVDCTIHAAQYVMSFCKVILSSPPGSGSAYT 194
Query: 169 AASLLKLXXXXXXXXXXXXXGEGRHG-KLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKL 227
A++ R+G KLA+ RPG +W + G + D AFYQGK
Sbjct: 195 VAAI----------------SVHRNGAKLALWRPGMTSWCICYGGCISKFSDVAFYQGKF 238
Query: 228 YAVDH-NEDLLAVTLAADGEPPAVSRIDRVINGKPPGAAALLRVTLHY-----LVDSGGE 281
Y + +L A + D VSR++R + P +V Y +V+ G+
Sbjct: 239 YILSKLTTNLFAFEITEDDCGMMVSRVERCVTELP-------QVKDSYGQRWNMVEWHGK 291
Query: 282 LLLVRREVQRS 292
LLLV R + S
Sbjct: 292 LLLVVRYIGGS 302
>Os06g0148700 Cyclin-like F-box domain containing protein
Length = 291
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 124/328 (37%), Gaps = 45/328 (13%)
Query: 19 ASSWRDLPLDIAGEVLRRLPSYADRICFGATCRSWRTSAREHRAPPPLSPCLCFADGSFR 78
+SSW DL ++ G VL RLPS ADR+ A CR WR++AR PPPL +G+F
Sbjct: 7 SSSWADLQPELLGLVLTRLPSLADRVRLRAVCRPWRSNARLQPLPPPLPWLTL-LNGTFL 65
Query: 79 GFFPEDARPFRLPAAAGWLGSCGEWLLYRRHDDGAYLLVDPFSKAAAMAPLPSVSRLHVR 138
+ LP A S W L+ HDDG + L++ FSKA P
Sbjct: 66 SISDGEIHCMPLPDDASCHCSIDNW-LFLSHDDGGFSLMNLFSKATLQLP---------- 114
Query: 139 HDPIVAVDERDLRWCRPTWLPRENTGEPQAAASLLKLXXXXXXXXXXXXXGEGRHGKLAV 198
+ D WC W A L L +
Sbjct: 115 --------KLDTIWCHHLWYAAPKFPLFYKLAVPSPLDFSPTSLVVALIMNRSHQKALCI 166
Query: 199 CRPGAPAWSV-SGGDGWRRIKDTAFYQGKLYAVDHNEDLLAVTLAADGEPPAVSRIDRVI 257
C+P S G ++D F GKLY +++ L + + S ID +I
Sbjct: 167 CQPPVATESFRVEGSTMEGMQDFTFLDGKLYVLNNFNKLFILEIDE-------SHIDYLI 219
Query: 258 NGKPPGAAALLRVTLHYLVDSGGELLLVRREVQRS-SMVRTQPWQHTAELQXXXXXXXXX 316
+ +YLV+SGG LL+V R V + ++H+ L
Sbjct: 220 MRR------------YYLVESGGGLLMVTRYVGIVLPLAEPNSFKHSRTLSFKVFEADLT 267
Query: 317 XXXXXXXXVKTIGDESGGRALFVGRWCS 344
V ++ GGRALFVG CS
Sbjct: 268 TGSRMWRRVTSL----GGRALFVGTHCS 291
>Os11g0624500 Protein of unknown function DUF295 family protein
Length = 244
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 189 GEGRHGKLAVCRPGAPAWSVSGGDGWRRIKDTAFYQGKLYAVDHNEDLLA--VTLAADGE 246
G K+A+C P WS+S D WR D AF+ G+LYA+ EDLLA V A DGE
Sbjct: 25 GREHFAKVALCTPEGFVWSISARDRWRWYDDMAFHGGRLYALTQAEDLLAFDVVDAGDGE 84
Query: 247 PPAVSRIDRVINGKPPGAAALLRVTLHYLVDS-GGELLLVRREVQRSSMVRTQPWQHTAE 305
P V+ ++RV+ A + +HYLV S G LL+VRRE+ A+
Sbjct: 85 P-VVTGVERVVRSSVD-ALDVEDTRMHYLVTSLDGALLMVRREM--------------AD 128
Query: 306 LQXXXXXXXXXXXXXXXXXVKTIGDESGGRALFVGRWCSRAVRVAGDRWADQVFFLEDGT 365
V+ G +GG ALFVGR CSRAVR D DQ+FFL+D
Sbjct: 129 AGSTDGFEVFEADLAASRWVEVGGLGAGGEALFVGRLCSRAVRAPDD--GDQIFFLDDTD 186
Query: 366 GDEWHTRAQ-RCSLRGSTFGCVRPN-ELLPLMTTADGQDLDATWIFP 410
G + Q R + + + VR +L + + TW+FP
Sbjct: 187 GLSFRWELQPRPPYQVAAYDMVRRTFSMLMWKKPLEDGNTPVTWLFP 233
>Os11g0594500
Length = 433
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 130/316 (41%), Gaps = 46/316 (14%)
Query: 17 PPASSWRDLPLDIAGEVLRRLPSYADRICFGATCR-SWRTSAREHRAPPPLSPCLCFADG 75
PP+S DLPL I G VLRRL S ADR + R SWR AR++ P
Sbjct: 13 PPSS--LDLPLGIVGAVLRRLHSSADRAALRSVFRRSWRAGARDYPPLVLAPPLPLVLYP 70
Query: 76 SFR--GFFPEDARP--FRLPAAAGWL-----GSC----GEWL----------LY-RRHDD 111
+F F + A R+P A L G C +WL LY D
Sbjct: 71 NFALASVFSDGAAAAGHRVPLLAALLDGAFPGQCIGCFEDWLVCTWLRLSIPLYPTVGAD 130
Query: 112 GAYLLVDPFSKAAAMAPLPSVSR---LHVRHDPI----------VAVDERDLRWCRPTWL 158
G +LV+PFS P P+ + R P+ + DE + +
Sbjct: 131 GGCVLVNPFSGEKVSLPSPTATHSCGAIQRSVPVSNGDGEVVCTIHADEYAMALYKAVLS 190
Query: 159 PRENTGEPQAAASLLKLXXXXXXXXXXXXXGEGRHGKLAVCRPGAPAWSVSGGDGWRRIK 218
N G +++S L L GE KLA C P P+W + G+ +
Sbjct: 191 APPNAGSSSSSSSELDLGSSCIVAAVSQRKGEY---KLAFCTPETPSWCICEGNCIKSHI 247
Query: 219 DTAFYQGKLYAVD-HNEDLLAVTLAA-DGEPPAVSRIDRVINGKPPGAAALLRVTLHYLV 276
D FY GKLY VD N DL A L A D P VS ++R + K P A R T + LV
Sbjct: 248 DIEFYLGKLYMVDTRNGDLFAFELEAHDHVFPVVSLVERCLIEKLPSAEDGDRQTYN-LV 306
Query: 277 DSGGELLLVRREVQRS 292
S G+LLL+ R + S
Sbjct: 307 QSLGKLLLLVRYFRES 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,019,036
Number of extensions: 782617
Number of successful extensions: 2535
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 13
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)