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Os01g0530500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0198) R2 : 0.86
β1 : 1.98 (0.0724) R2dD : 0.238 R2D : 0.179
β2 : 2.22 (0.0501) R2dC : 0.61 R2C : 0.577
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.639 (0.0422) R2dN8 : 0.0947 R2N8 : 0.0136
σ : 0.372
deviance : 63.1
__
_____
C
peak time of C : 20.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.48 0.35 8.7 2.16 2.21 0.855 -0.207 -0.317 0.723 20.1 21.33 119 -- --
55.52 0.347 8.7 2.15 2.21 0.971 -0.204 -- 0.72 20.1 21.1 126 -- --
55.57 0.35 8.69 2.16 2.2 0.786 -- -0.526 0.724 20.1 21.33 119 -- --
55.64 0.347 8.7 2.15 2.22 0.978 -- -- 0.72 20.1 21.1 127 -- --
315.01 0.831 8.62 2.26 -- 1.12 -- -0.523 0.783 -- 23.2 12 -- --
62.87 0.372 8.72 1.97 2.22 -- -0.278 -- 0.64 20.2 -- -- -- --
63.1 0.372 8.72 1.98 2.22 -- -- -- 0.639 20.2 -- -- -- --
315.06 0.83 8.63 2.2 -- 1.21 -- -- 0.771 -- 23.07 10 -- --
152.39 0.575 8.79 -- 1.97 -1.04 -- -- 0.293 20.5 42.79 455 -- --
335.36 0.856 8.66 1.96 -- -- -- -- 0.614 -- -- -- -- --
165.99 0.603 8.77 -- 2.21 -- -- -- 0.419 20.3 -- -- -- --
324.93 0.84 8.78 -- -- -2.57 -- -- 0.0851 -- 130.8 598 -- --
436.61 0.975 8.71 -- -- -- -- -- 0.397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.57 temperature 15.0 270 > th dose independent rect. 6 16
3 47.55 temperature 30.0 270 < th dose dependent rect. 22 8
4 47.87 temperature 20.0 90 > th dose independent rect. 19 17
7 48.07 temperature 15.0 270 > th dose independent rect. 17 18
12 48.57 temperature 20.0 10 > th dose independent rect. 20 17
22 49.16 radiation 1.0 270 > th dose independent rect. 18 17
26 49.30 radiation 1.0 270 > th dose independent rect. 4 7
37 49.35 humidity 90.0 90 < th dose independent rect. 7 5
40 49.41 humidity 90.0 10 < th dose independent rect. 7 6
44 49.58 temperature 15.0 90 > th dose independent rect. 7 5
45 49.58 temperature 10.0 270 > th dose dependent rect. 18 16
53 49.76 atmosphere 1015.0 270 < th dose independent rect. 6 16
60 49.87 radiation 1.0 270 < th dose independent rect. 22 13
64 49.93 temperature 15.0 270 > th dose independent rect. 5 7
66 49.95 radiation 1.0 270 > th dose independent sin 8 NA
67 49.95 radiation 1.0 270 < th dose independent sin 8 NA
74 50.07 radiation 1.0 270 < th dose dependent sin 7 NA
79 50.18 wind 7.0 270 < th dose independent rect. 11 6
82 50.21 temperature 20.0 30 > th dose independent rect. 8 17
85 50.28 temperature 30.0 270 < th dose independent rect. 5 7
86 50.29 radiation 10.0 270 < th dose dependent rect. 22 9
89 50.30 wind 7.0 270 < th dose independent rect. 10 8
91 50.33 wind 7.0 270 < th dose independent rect. 12 17
93 50.34 wind 7.0 270 < th dose independent rect. 11 19
105 50.37 temperature 10.0 270 > th dose dependent rect. 10 7
108 50.39 temperature 15.0 270 > th dose independent rect. 16 9
113 50.42 radiation 1.0 270 < th dose dependent rect. 22 13
128 50.50 wind 9.0 270 < th dose independent rect. 22 8
130 50.51 temperature 10.0 270 > th dose independent rect. 22 8
131 50.51 temperature 30.0 270 < th dose independent rect. 22 8
132 50.51 humidity 50.0 270 > th dose independent rect. 22 8
135 50.51 atmosphere 995.0 270 > th dose independent rect. 22 8
136 50.51 radiation 20.0 270 < th dose independent rect. 22 8
149 50.56 temperature 10.0 10 > th dose dependent rect. 20 16
186 50.74 precipitation 0.1 270 < th dose independent rect. 22 8
187 50.74 atmosphere 1015.0 270 < th dose independent rect. 18 16
188 50.74 precipitation 0.1 270 < th dose dependent rect. 22 8
191 50.77 temperature 30.0 270 < th dose independent rect. 6 5
199 50.82 precipitation 0.1 270 < th dose independent rect. 6 16
202 50.82 precipitation 0.1 270 < th dose dependent rect. 6 16
211 50.89 atmosphere 1010.0 270 < th dose independent rect. 16 9
212 50.89 wind 9.0 270 < th dose independent rect. 9 22
218 50.93 precipitation 0.1 1440 < th dose independent rect. 10 3
219 50.93 precipitation 0.1 1440 < th dose dependent rect. 10 3
224 50.97 atmosphere 1015.0 270 < th dose independent rect. 17 18
226 50.98 temperature 15.0 270 > th dose independent rect. 7 3
231 51.00 atmosphere 1010.0 270 < th dose independent rect. 17 6
233 51.00 temperature 30.0 270 < th dose independent rect. 17 18
234 51.01 wind 9.0 90 < th dose independent rect. 7 5
241 51.04 temperature 15.0 270 > th dose independent rect. 5 20
245 51.06 temperature 10.0 270 > th dose independent rect. 10 8
246 51.06 atmosphere 1015.0 270 < th dose independent rect. 10 8
253 51.10 wind 9.0 270 < th dose independent rect. 18 16
257 51.11 humidity 50.0 270 > th dose independent rect. 18 16
274 51.14 atmosphere 995.0 270 > th dose independent rect. 6 16
275 51.14 atmosphere 995.0 270 > th dose independent rect. 18 16
278 51.15 temperature 30.0 270 < th dose independent rect. 18 16
291 51.19 humidity 50.0 270 > th dose dependent rect. 22 8
294 51.20 precipitation 0.1 270 < th dose independent rect. 10 8
295 51.20 precipitation 0.1 270 < th dose dependent rect. 10 8
309 51.25 precipitation 0.1 270 < th dose independent rect. 6 5
310 51.25 precipitation 0.1 270 < th dose dependent rect. 6 5
323 51.29 precipitation 0.1 270 < th dose independent rect. 11 6
325 51.29 precipitation 0.1 270 < th dose dependent rect. 11 6
332 51.32 temperature 10.0 270 > th dose independent rect. 11 6
333 51.32 atmosphere 1015.0 270 < th dose independent rect. 11 6
340 51.34 temperature 30.0 270 < th dose independent rect. 6 16
345 51.35 precipitation 0.1 270 < th dose independent rect. 11 19
347 51.35 precipitation 0.1 270 < th dose dependent rect. 11 19
360 51.38 atmosphere 995.0 270 > th dose independent rect. 6 5
362 51.38 atmosphere 1015.0 270 < th dose independent rect. 6 5
367 51.38 temperature 10.0 270 > th dose independent rect. 11 19
372 51.40 temperature 20.0 10 > th dose independent rect. 7 6
374 51.40 temperature 10.0 270 > th dose dependent rect. 17 8
376 51.41 wind 9.0 270 < th dose independent rect. 17 18
410 51.48 humidity 50.0 270 > th dose independent rect. 6 5
411 51.48 radiation 1.0 270 > th dose independent rect. 11 6
423 51.50 precipitation 0.1 270 < th dose independent rect. 18 16
425 51.50 precipitation 0.1 270 < th dose dependent rect. 18 16
436 51.52 atmosphere 995.0 270 > th dose independent rect. 17 18
454 51.56 wind 1.0 90 > th dose independent rect. 7 5
455 51.56 wind 9.0 270 < th dose independent rect. 6 16
456 51.58 precipitation 0.1 270 < th dose independent rect. 7 2
459 51.58 precipitation 0.1 270 < th dose independent rect. 17 18
460 51.58 precipitation 0.1 270 < th dose dependent rect. 7 2
461 51.58 precipitation 0.1 270 < th dose dependent rect. 17 18
462 51.59 wind 7.0 270 < th dose independent rect. 7 2
483 51.64 humidity 50.0 270 > th dose independent rect. 7 2
484 51.64 atmosphere 995.0 270 > th dose independent rect. 7 2
485 51.64 atmosphere 1015.0 270 < th dose independent rect. 7 2
489 51.64 temperature 10.0 270 > th dose independent rect. 9 22
501 51.67 wind 9.0 10 < th dose independent rect. 7 6
541 51.74 radiation 40.0 270 < th dose independent rect. 18 16
572 51.79 wind 1.0 270 > th dose independent rect. 6 16
582 51.81 radiation 1.0 270 > th dose independent rect. 10 8
592 51.84 radiation 10.0 10 > th dose independent rect. 6 6
637 51.89 wind 1.0 90 > th dose independent rect. 12 19
639 51.90 wind 1.0 270 > th dose independent rect. 10 8
647 51.93 humidity 90.0 270 < th dose independent rect. 11 6
653 51.94 wind 1.0 270 > th dose independent rect. 11 6
683 52.01 wind 1.0 90 > th dose independent rect. 13 17
720 52.08 wind 9.0 270 < th dose dependent rect. 11 6
765 52.16 precipitation 0.1 10 < th dose independent rect. 7 6
769 52.16 precipitation 0.1 10 < th dose dependent rect. 7 6
776 52.18 temperature 10.0 10 > th dose independent rect. 7 6
778 52.18 atmosphere 995.0 10 > th dose independent rect. 7 6
779 52.18 atmosphere 1015.0 10 < th dose independent rect. 7 6
781 52.18 temperature 10.0 10 > th dose independent rect. 13 18
834 52.25 radiation 1.0 10 > th dose dependent rect. 7 5
838 52.27 precipitation 0.1 10 < th dose independent rect. 13 18
841 52.27 precipitation 0.1 10 < th dose dependent rect. 13 18
852 52.29 wind 1.0 10 > th dose independent rect. 7 6
866 52.31 temperature 10.0 90 > th dose dependent rect. 7 5
879 52.34 wind 1.0 270 > th dose independent rect. 22 8
882 52.34 humidity 50.0 10 > th dose dependent rect. 23 9
911 52.38 radiation 20.0 270 < th dose independent rect. 15 10
914 52.38 atmosphere 995.0 270 > th dose independent rect. 11 19
917 52.39 temperature 25.0 270 > th dose independent rect. 11 6
935 52.41 atmosphere 995.0 270 > th dose independent rect. 11 6
941 52.41 temperature 10.0 10 > th dose dependent rect. 12 8
971 52.49 wind 9.0 270 < th dose independent rect. 1 15
992 52.53 temperature 10.0 1440 > th dose independent rect. 8 6
995 52.53 atmosphere 995.0 1440 > th dose independent rect. 8 6
1000 52.53 temperature 10.0 1440 > th dose independent rect. 14 18