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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0624500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0373) R2 : 0.0201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.24 (0.0784) R2dN8 : 0.026 R2N8 : 0.0201
σ : 0.702
deviance : 226.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.94 0.676 3.51 0.658 0.3 -1.08 0.0337 0.522 -0.0271 15.1 10 10 -- --
211.11 0.677 3.52 0.588 0.302 -1.07 0.17 -- -0.0464 15 14.4 11 -- --
210.95 0.676 3.51 0.663 0.3 -1.08 -- 0.557 -0.0259 15.1 9.766 10 -- --
211.21 0.677 3.52 0.587 0.303 -1.07 -- -- -0.0467 15.1 13.55 10 -- --
214.41 0.682 3.52 0.599 -- -0.736 -- 0.639 -0.0764 -- 7.982 10 -- --
221.58 0.698 3.55 0.368 0.061 -- -0.383 -- -0.197 20.2 -- -- -- --
222.03 0.698 3.55 0.379 0.0613 -- -- -- -0.198 20.8 -- -- -- --
214.75 0.683 3.53 0.511 -- -0.723 -- -- -0.101 -- 9.623 10 -- --
219.42 0.69 3.54 -- 0.215 -0.783 -- -- -0.147 15.4 14.4 10 -- --
222.24 0.697 3.55 0.379 -- -- -- -- -0.198 -- -- -- -- --
225.81 0.703 3.56 -- 0.0609 -- -- -- -0.24 21.3 -- -- -- --
221.24 0.693 3.55 -- -- -0.561 -- -- -0.176 -- 9.556 10 -- --
226.02 0.702 3.56 -- -- -- -- -- -0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.30 temperature 10.0 30 > th dose dependent rect. 3 23
3 197.15 temperature 30.0 30 < th dose dependent rect. 2 1
4 197.16 atmosphere 1005.0 10 > th dose independent rect. 2 1
8 197.73 humidity 80.0 30 > th dose independent rect. 2 1
11 197.95 temperature 25.0 30 < th dose independent rect. 2 1
12 197.99 atmosphere 995.0 30 > th dose dependent rect. 2 1
14 198.03 wind 3.0 30 < th dose dependent rect. 2 1
15 198.04 wind 3.0 30 < th dose independent rect. 2 1
23 198.13 temperature 10.0 30 > th dose independent rect. 2 1
26 198.13 humidity 50.0 30 > th dose independent rect. 2 1
30 198.13 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 198.13 radiation 1.0 30 < th dose independent rect. 2 1
37 198.13 precipitation 0.1 30 < th dose independent rect. 2 1
38 198.13 temperature 10.0 30 > th dose independent rect. 3 23
39 198.13 humidity 50.0 30 > th dose dependent rect. 2 1
41 198.13 radiation 1.0 30 < th dose dependent rect. 2 1
46 198.13 precipitation 0.1 30 < th dose dependent rect. 2 1
58 198.56 temperature 10.0 30 > th dose dependent rect. 2 1
60 198.62 atmosphere 1015.0 30 < th dose dependent rect. 2 1
63 198.74 temperature 15.0 10 > th dose dependent rect. 6 20
90 198.96 wind 1.0 30 > th dose independent rect. 2 1
106 199.62 wind 9.0 30 < th dose independent rect. 3 23
119 200.65 atmosphere 1000.0 1440 > th dose independent rect. 3 1
134 202.03 precipitation 0.1 90 > th dose independent rect. 10 4
138 202.08 precipitation 0.1 90 > th dose dependent rect. 10 4
159 203.05 atmosphere 1000.0 1440 > th dose independent rect. 2 5
167 203.26 atmosphere 1000.0 1440 > th dose independent rect. 2 7
176 203.55 humidity 90.0 90 > th dose dependent rect. 10 4
177 203.56 atmosphere 1000.0 1440 < th dose independent rect. 2 8
182 203.58 temperature 30.0 30 < th dose dependent rect. 1 17
183 203.59 atmosphere 1000.0 1440 < th dose independent rect. 2 1
194 203.74 atmosphere 1000.0 1440 < th dose independent rect. 2 5
201 203.75 atmosphere 1000.0 1440 < th dose dependent rect. 3 1
208 203.81 atmosphere 1000.0 1440 < th dose dependent rect. 2 8
228 204.02 precipitation 0.1 30 < th dose independent rect. 3 23
230 204.02 precipitation 0.1 30 < th dose dependent rect. 3 23
274 204.40 humidity 90.0 30 > th dose independent rect. 11 5
314 204.75 atmosphere 1000.0 1440 < th dose independent rect. 5 2
321 204.77 atmosphere 1000.0 1440 < th dose independent rect. 7 2
351 204.98 atmosphere 1000.0 1440 < th dose dependent rect. 7 2
367 205.11 humidity 90.0 30 > th dose independent rect. 13 3
384 205.22 humidity 90.0 30 > th dose dependent rect. 13 3
393 205.27 precipitation 0.1 90 > th dose independent rect. 13 1
398 205.27 precipitation 0.1 90 > th dose dependent rect. 13 1
414 205.35 temperature 30.0 90 < th dose independent rect. 1 16
427 205.40 humidity 90.0 30 > th dose independent rect. 13 1
442 205.45 humidity 90.0 30 > th dose dependent rect. 13 1
643 206.51 atmosphere 1015.0 1440 < th dose independent rect. 3 1
651 206.60 temperature 20.0 30 > th dose independent rect. 6 20
652 206.60 temperature 10.0 270 > th dose dependent rect. 3 10
669 206.86 wind 5.0 1440 < th dose independent rect. 14 1
707 207.16 radiation 1.0 4320 < th dose dependent rect. 3 1
717 207.26 temperature 20.0 270 > th dose independent rect. 3 20
723 207.30 radiation 1.0 43200 < th dose dependent rect. 3 1
726 207.35 wind 9.0 4320 < th dose independent rect. 3 1
735 207.39 temperature 10.0 1440 > th dose independent rect. 3 1
738 207.39 temperature 30.0 1440 < th dose independent rect. 3 1
742 207.39 humidity 50.0 1440 > th dose independent rect. 3 1
752 207.39 radiation 1.0 1440 < th dose independent rect. 3 1
773 207.39 temperature 10.0 1440 > th dose independent rect. 4 23
789 207.43 temperature 30.0 10 < th dose dependent rect. 11 19
793 207.46 wind 5.0 1440 > th dose independent rect. 14 1
840 207.79 precipitation 0.1 1440 < th dose independent rect. 17 1
841 207.79 precipitation 0.1 1440 < th dose dependent rect. 17 1
853 207.87 temperature 10.0 720 > th dose dependent rect. 3 12
864 208.02 temperature 30.0 270 < th dose independent rect. 23 16
875 208.08 atmosphere 1000.0 30 > th dose independent rect. 1 5
881 208.18 wind 3.0 1440 > th dose dependent rect. 14 1
894 208.28 radiation 20.0 30 < th dose independent rect. 11 19
897 208.29 temperature 10.0 270 > th dose dependent rect. 3 8
903 208.32 atmosphere 995.0 30 > th dose independent rect. 3 23
939 208.53 temperature 25.0 4320 < th dose independent rect. 1 2
946 208.56 temperature 15.0 10 > th dose dependent rect. 6 23
948 208.57 humidity 90.0 10 > th dose independent rect. 2 16
953 208.59 atmosphere 1000.0 270 > th dose independent rect. 23 4
955 208.59 atmosphere 995.0 10 > th dose dependent rect. 1 5
966 208.67 wind 9.0 1440 < th dose dependent rect. 14 1
970 208.70 atmosphere 1015.0 30 < th dose independent rect. 3 23
974 208.74 wind 3.0 10 < th dose dependent rect. 2 4
979 208.77 temperature 25.0 4320 < th dose independent rect. 22 5
984 208.80 humidity 90.0 10 > th dose independent rect. 2 12
989 208.81 temperature 10.0 720 > th dose dependent rect. 3 6