BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0157600 Os02g0157600|J100044P04
(139 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0157600 Rhodanese-like domain containing protein 261 9e-71
Os12g0428000 Rhodanese-like domain containing protein 146 4e-36
Os02g0102300 Similar to Thiosulfate sulfurtransferase (EC 2... 107 3e-24
Os04g0249600 Rhodanese-like domain containing protein 100 3e-22
Os06g0725000 Similar to Ntdin 87 4e-18
>Os02g0157600 Rhodanese-like domain containing protein
Length = 139
Score = 261 bits (668), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 128/139 (92%), Positives = 128/139 (92%)
Query: 1 DTTXXXXXXXXXXXNKKELEALPIVDAGEVRELMSSGHHYLDVRLGKDFDKAHADGARNI 60
DTT NKKELEALPIVDAGEVRELMSSGHHYLDVRLGKDFDKAHADGARNI
Sbjct: 1 DTTSSSMASAAMSSNKKELEALPIVDAGEVRELMSSGHHYLDVRLGKDFDKAHADGARNI 60
Query: 61 SYYLSVTPSGKEKNPHFVDEVASLFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLK 120
SYYLSVTPSGKEKNPHFVDEVASLFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLK
Sbjct: 61 SYYLSVTPSGKEKNPHFVDEVASLFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLK 120
Query: 121 GGYQSFLRSESQQPAAHQQ 139
GGYQSFLRSESQQPAAHQQ
Sbjct: 121 GGYQSFLRSESQQPAAHQQ 139
>Os12g0428000 Rhodanese-like domain containing protein
Length = 162
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 25 VDAGEVRELMSSG-HHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVAS 83
VDA E L+SSG H YLDVR+ +DFDK H GARN+ YYLSVTP KEKNPHFV +VA+
Sbjct: 53 VDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYYLSVTPRAKEKNPHFVQQVAA 112
Query: 84 LFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRSESQQ 133
L+ +H+IV C +GVRS+LAT DL+ AGFKNVR L+GGY S LR+ +QQ
Sbjct: 113 LYHAHDHIIVGCRSGVRSKLATADLVAAGFKNVRILEGGYLSLLRAANQQ 162
>Os02g0102300 Similar to Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)
(Senescence- associated protein) (Sulfurtransferase
protein 16) (AtStr16)
Length = 137
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 25 VDAGEVRELMSS-GHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVAS 83
VD +L++S GH Y+DVR ++ +K H + N+ + VTP GKEKNP FV++ +S
Sbjct: 21 VDVAAASDLITSAGHRYVDVRTEEEMNKGHLHNSLNVPFMF-VTPQGKEKNPLFVEQFSS 79
Query: 84 LFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFL 127
L K+EH++V C +G RS LA DLL+AGFKNV+N+ GGY ++L
Sbjct: 80 LVSKEEHVVVGCQSGKRSELACVDLLEAGFKNVKNMGGGYAAWL 123
>Os04g0249600 Rhodanese-like domain containing protein
Length = 138
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 35 SSGHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVASLFGKDEHLIVA 94
S GH YLDVR ++F K H + + N+ + L TP GKEKN F+++VA + K++++IV
Sbjct: 32 SGGHSYLDVRTEEEFKKGHVENSLNVPF-LFFTPQGKEKNTKFIEQVALHYDKEDNIIVG 90
Query: 95 CNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRS 129
C +GVRS LA+ DL+ AGFKNV+N++GGY +++ +
Sbjct: 91 CLSGVRSELASADLIAAGFKNVKNMEGGYMAWVEN 125
>Os06g0725000 Similar to Ntdin
Length = 116
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 32 ELMSSGHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVASLFGKDEHL 91
EL +GH YLDVR +F H GA NI Y + T SG KN HF+++V++ FGK++ +
Sbjct: 14 ELQQAGHRYLDVRTEGEFAGGHPVGAVNIPY-MYKTGSGLTKNTHFLEKVSTTFGKEDEI 72
Query: 92 IVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRSE 130
IV C +G RS +A +L AGF V ++ GG+ ++ +E
Sbjct: 73 IVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENE 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,380,491
Number of extensions: 166287
Number of successful extensions: 242
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)