BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0124400 Os02g0124400|AK108718
(290 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0124400 Conserved hypothetical protein 531 e-151
Os02g0124600 Plant-specific FAD-dependent oxidoreductase fa... 438 e-123
Os03g0563100 Plant-specific FAD-dependent oxidoreductase fa... 329 1e-90
Os08g0114300 Plant-specific FAD-dependent oxidoreductase fa... 314 5e-86
Os04g0361500 Plant-specific FAD-dependent oxidoreductase fa... 259 2e-69
Os01g0687800 Plant-specific FAD-dependent oxidoreductase fa... 241 6e-64
Os08g0519100 Plant-specific FAD-dependent oxidoreductase fa... 196 2e-50
>Os02g0124400 Conserved hypothetical protein
Length = 290
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/290 (91%), Positives = 264/290 (91%)
Query: 1 SPTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRRGVLXXXXXXXXXXY 60
SPTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRRGVL Y
Sbjct: 1 SPTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRRGVLPPPPGAAVVGY 60
Query: 61 QNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDLN 120
QNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDLN
Sbjct: 61 QNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDLN 120
Query: 121 PDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQM 180
PDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQM
Sbjct: 121 PDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQM 180
Query: 181 ALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKXXXXXXXX 240
ALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDK
Sbjct: 181 ALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKVLGVAGAG 240
Query: 241 XXXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVAGDH 290
CALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVAGDH
Sbjct: 241 GVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVAGDH 290
>Os02g0124600 Plant-specific FAD-dependent oxidoreductase family protein
Length = 599
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/292 (73%), Positives = 237/292 (81%), Gaps = 3/292 (1%)
Query: 1 SPTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRRG-VLXXXXXXXXXX 59
+PT+AIQA R+ ED LEAT N+AGKCLA S T + LAA NYG+TR G +L
Sbjct: 307 TPTLAIQAKRLVEDGLEATGNAAGKCLAASTTNSILAARNYGLTRNGQLLGAFPGTAVVG 366
Query: 60 YQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDL 119
YQNRIQSSGSCL+GADDGLLTAC WDPRV H +FFFQSGISVPLS AAAFIRDVQRLRDL
Sbjct: 367 YQNRIQSSGSCLAGADDGLLTACPWDPRVEHGTFFFQSGISVPLSRAAAFIRDVQRLRDL 426
Query: 120 NPDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQ 179
NPDALCG+E+Y GVL+RYVRAS AHLGKPEDSV+ DLTYYRSRDPA P LHED VEE+EQ
Sbjct: 427 NPDALCGVELYDGVLMRYVRASAAHLGKPEDSVDFDLTYYRSRDPATPLLHEDVVEEVEQ 486
Query: 180 MALRKYGGVPHWGKNRNAAFDGAIAKY--PKSGEFLKVKGSYDPEGLFSSEWSDKXXXXX 237
MALRKYGGVPHWGKN+NAAF+GA AKY ++ F++VK +YDPEGLFSSEWSDK
Sbjct: 487 MALRKYGGVPHWGKNQNAAFEGAAAKYGGARAAAFMRVKRAYDPEGLFSSEWSDKVLGVA 546
Query: 238 XXXXXXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVAGD 289
CALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVA D
Sbjct: 547 GAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRVADD 598
>Os03g0563100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 604
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/295 (53%), Positives = 207/295 (70%), Gaps = 13/295 (4%)
Query: 1 SPTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRR--GVLXXXXXXXXX 58
+P + I+ NR+ E+ E N GKC+ T A L++ YG+ RR G+
Sbjct: 314 TPRLLIRTNRLAEELFERAGNGNGKCVTSRVTHAALSSAGYGLMRRSGGLFTGYPVVGP- 372
Query: 59 XYQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRD 118
Q+ +Q+SG C++G +D LLTAC WDPRVR +SFF Q+ S+P+S A AF+ +V+RLRD
Sbjct: 373 --QHLMQASGGCITGPEDALLTACPWDPRVRGSSFFHQTTFSLPVSRAGAFVEEVRRLRD 430
Query: 119 LNPDALCGLEVYYGVLLRYVRASTAHLGKP-------EDSVELDLTYYRSRDPAAPRLHE 171
+NP ALCG+E+Y G+L+RYV+ASTAHLGKP +D V+ D+TYYRSRDP RL E
Sbjct: 431 MNPKALCGVELYDGILIRYVKASTAHLGKPAAGGGQSDDMVDFDMTYYRSRDPNRARLFE 490
Query: 172 DAVEEIEQMALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSD 231
D +EEIEQM + KYGG+PHWGKNRN AF GA KYP+ GEFL++K +YDP+GLFSS+WSD
Sbjct: 491 DVLEEIEQMGVFKYGGLPHWGKNRNLAFVGAARKYPRIGEFLRIKDAYDPDGLFSSDWSD 550
Query: 232 KXXXXXXXXXXXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRRV 286
CALEG+CVCS+DAHC+PE+GY+CRPG+VYK+ARVC +V
Sbjct: 551 -MMLGIGGRAPTRDAPGCALEGMCVCSQDAHCAPEQGYVCRPGKVYKDARVCTKV 604
>Os08g0114300 Plant-specific FAD-dependent oxidoreductase family protein
Length = 589
Score = 314 bits (804), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 191/284 (67%), Gaps = 5/284 (1%)
Query: 2 PTVAIQANRIGEDALEATANSAGKCLAGSATIARLAAGNYGVTRRGVLXXXXXXXXXXYQ 61
PT+ + R E+ LE +CLA + YG T GV +Q
Sbjct: 296 PTLGLITARAAEERLERNGTDIARCLAARLPPSLFELQAYGFTNDGVFFTGWPVVG--FQ 353
Query: 62 NRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDLNP 121
+RIQ+SG+C+S +DGLL++CTWDPR+R F + SG S+ L AAAF+ D+ RLRDLNP
Sbjct: 354 HRIQASGTCISSPEDGLLSSCTWDPRIR-GPFLYNSGFSIALPRAAAFVADMMRLRDLNP 412
Query: 122 DALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQMA 181
A C ++ G+L+RYV+AS+A+LGKPED V+ D+TYYRS D PR H D +E+EQMA
Sbjct: 413 RAFCDIDAKLGILMRYVKASSAYLGKPEDCVDFDVTYYRSYDDGEPRPHSDVFDELEQMA 472
Query: 182 LRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKXXXXXXXXX 241
LRKYG VPHWGKNRN AFDGA AKYP SGEF+KVK YDP+G+FSSEWSD+
Sbjct: 473 LRKYGAVPHWGKNRNFAFDGAAAKYPNSGEFIKVKERYDPDGIFSSEWSDQ--VLGISGS 530
Query: 242 XXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCRR 285
CA+EGLCVCS+D+HC+PE GY CRPG+++KEARVC +
Sbjct: 531 PNIVDKRCAIEGLCVCSDDSHCAPELGYFCRPGKLFKEARVCSK 574
>Os04g0361500 Plant-specific FAD-dependent oxidoreductase family protein
Length = 590
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 176/284 (61%), Gaps = 24/284 (8%)
Query: 1 SPTVAIQANRIGEDALEATANS-AGKCLAGSATIARLAAGNYGVTRRGVLXXXXXXXXXX 59
+PT+ + A+R+ E+ LE + S A +C A A L NYG+T G
Sbjct: 307 TPTLPLVASRLAEEWLEERSGSDAARCAASRVMPATLEHLNYGLTNDG----EAFTGTTG 362
Query: 60 YQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDL 119
+SG+ L G F+ SG S+ LS A AF+ DV R+RDL
Sbjct: 363 TSPPTTASGTALRG------------------HLFYNSGFSIALSRAPAFVADVARIRDL 404
Query: 120 NPDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQ 179
NP A C ++ G+L+RYV AS+A+LGK EDSV+ D+TYYRS APR H D +E+EQ
Sbjct: 405 NPAAFCQIDSKMGLLMRYVAASSAYLGKAEDSVDFDVTYYRSYARGAPRAHADVFDEVEQ 464
Query: 180 MALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKXXXXXXX 239
MALRK+GGVPHWGKNRN AFDGAIA+YP +G+F++VK +DP+G+FSSEWSD+
Sbjct: 465 MALRKHGGVPHWGKNRNYAFDGAIARYPNAGKFMRVKDRFDPDGVFSSEWSDQ-VLGVGG 523
Query: 240 XXXXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVC 283
CA+EGLCVCS+D+HC+PEKGY CRPG+V+ ARVC
Sbjct: 524 ASPVIVGDGCAMEGLCVCSDDSHCAPEKGYFCRPGKVFTAARVC 567
>Os01g0687800 Plant-specific FAD-dependent oxidoreductase family protein
Length = 592
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 170/286 (59%), Gaps = 7/286 (2%)
Query: 1 SPTVAIQAN-RIGEDALEATANSAGKCLAGSATIA-RLAAGNYGVTRRGVLXXXXXXXXX 58
S +A+ + R E ALEA+ N GKC +A IA + GN G L
Sbjct: 305 STLIAVSSGIRALETALEASRNVKGKCKMAAAEIAAKRLVGNGLRGAGGRLFTGYPVVG- 363
Query: 59 XYQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRD 118
+Q R+Q+SGSC L+AC WDPR + F+ + + P + F+ DV+RLRD
Sbjct: 364 -FQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYESTAMFSPAARFRDFVLDVKRLRD 422
Query: 119 LNPDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIE 178
++PD++CG++ Y G+L+R+V+AS A+LG+PED+V +D YYR+ D ++PRL +D EE+E
Sbjct: 423 VDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVDFNYYRASDGSSPRLSQDVWEEVE 482
Query: 179 QMALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKXXXXXX 238
Q+A K+G PHW KNR AAF G KYP +F K DP GLF S WSD+
Sbjct: 483 QLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAAKRQLDPRGLFDSRWSDE---VVG 539
Query: 239 XXXXXXXXXXCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCR 284
CALEG CVCSED HCSP KGY CRPG VY EARVCR
Sbjct: 540 GEEQLPKADGCALEGRCVCSEDRHCSPSKGYYCRPGLVYSEARVCR 585
>Os08g0519100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 450
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/173 (60%), Positives = 122/173 (70%), Gaps = 23/173 (13%)
Query: 60 YQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDL 119
+QN IQSS S + + + FQ+GISVPLS A+AFIRD QRL D+
Sbjct: 295 FQNVIQSSRST--------------EQQQHGDVLPFQAGISVPLSRASAFIRDAQRLLDM 340
Query: 120 NPDALCGLEVYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSR-DPAAPRLHEDAVEEIE 178
NP ALCG E G+L+RYV+ASTA+LGK EDSVE D T R D A P EE+E
Sbjct: 341 NPGALCGGE-NGGILIRYVKASTAYLGKTEDSVEFDTTSCRHDGDAAMP-------EEME 392
Query: 179 QMALRKYGGVPHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSD 231
QMALRKYGGVPHWGKNRN AFDGAIAK+PK+GEF+KVK +YDP+GLFSSEWSD
Sbjct: 393 QMALRKYGGVPHWGKNRNVAFDGAIAKFPKAGEFMKVKDAYDPDGLFSSEWSD 445
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,605,815
Number of extensions: 373660
Number of successful extensions: 717
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 7
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)