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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0114300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant-specific FAD-dependent oxidoreductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.46 (0.0875) R2 : 0.548
β1 : -3.45 (0.441) R2dD : 0.149 R2D : 0.0758
β2 : 0.987 (0.203) R2dC : 0.0237 R2C : 0.0074
β3 : 6.73 (0.338) R2dE : 0.619 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12 (1.23) R2dD*E : 0.277 R2D*E : -0.417
γ1 : 1.93 (0.197) R2dN8 : 0.177 R2N8 : 0.0366
σ : 1.46
deviance : 986.11
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_____
C
peak time of C : 7.09
E
wheather : radiation
threshold : 1.244
memory length : 13005
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
986.48 1.48 6.46 -3.44 0.985 6.7 -0.00602 12 1.93 6.97 1.25 12998 -- --
1143.57 1.58 6.19 -2.03 1.08 4.5 0.386 -- 2.27 6.46 2.15 12936 -- --
986.11 1.46 6.46 -3.45 0.987 6.73 -- 12 1.93 7.09 1.244 13005 -- --
1107.47 1.55 6.1 -0.923 0.841 5.19 -- -- 2.73 6.78 2.04 12941 -- --
1030.79 1.5 6.49 -3.46 -- 7.02 -- 12.7 1.92 -- 1.28 13159 -- --
1854.23 2.02 6.47 -2.41 0.851 -- -1.04 -- 0.988 8.12 -- -- -- --
1856.23 2.02 6.47 -2.45 0.878 -- -- -- 0.985 7.48 -- -- -- --
1112.73 1.55 6.09 -1.03 -- 5.28 -- -- 2.79 -- 2.071 18089 -- --
1026.64 1.49 6.03 -- 0.868 5.27 -- -- 2.9 6.99 1.519 25911 -- --
1897.44 2.04 6.49 -2.44 -- -- -- -- 0.999 -- -- -- -- --
2014.36 2.1 6.41 -- 0.858 -- -- -- 1.26 7.67 -- -- -- --
1022.39 1.49 6.07 -- -- 6.13 -- -- 3.03 -- 1.55 28169 -- --
2053.96 2.12 6.43 -- -- -- -- -- 1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 973.58 humidity 90.0 43200 < th dose independent rect. 20 1
2 973.99 radiation 40.0 14400 < th dose dependent rect. 18 12
3 974.17 humidity 80.0 43200 > th dose dependent rect. 17 2
4 974.94 humidity 90.0 43200 < th dose independent rect. 17 6
23 979.16 humidity 90.0 43200 > th dose independent rect. 20 3
37 980.42 humidity 90.0 43200 > th dose dependent rect. 22 1
39 980.63 radiation 40.0 14400 < th dose dependent rect. 20 10
43 981.21 radiation 40.0 14400 < th dose dependent rect. 22 8
59 982.40 radiation 40.0 14400 < th dose dependent rect. 24 6
77 983.76 radiation 1.0 14400 > th dose independent rect. 16 14
80 983.79 radiation 40.0 14400 < th dose dependent rect. 4 2
114 985.63 radiation 1.0 14400 > th dose independent rect. 18 12
115 985.68 radiation 1.0 14400 < th dose independent rect. 16 14
129 986.75 radiation 1.0 14400 < th dose independent rect. 18 12
163 989.25 radiation 1.0 14400 > th dose independent rect. 15 19
166 989.38 radiation 1.0 14400 > th dose independent sin 12 NA
174 990.01 radiation 1.0 14400 < th dose independent rect. 15 19
175 990.05 humidity 90.0 43200 < th dose independent sin 18 NA
181 990.33 radiation 1.0 14400 < th dose independent sin 12 NA
187 990.57 humidity 80.0 43200 < th dose independent rect. 16 1
197 990.94 precipitation 0.1 43200 > th dose independent rect. 16 11
199 991.04 humidity 80.0 43200 > th dose independent rect. 16 2
209 991.39 precipitation 0.1 43200 < th dose independent rect. 16 11
210 991.39 precipitation 0.1 43200 < th dose dependent rect. 16 11
220 991.76 radiation 1.0 14400 < th dose independent rect. 5 1
225 992.02 radiation 1.0 14400 > th dose independent rect. 5 1
263 993.34 radiation 40.0 14400 < th dose dependent rect. 17 14
278 993.79 radiation 1.0 14400 < th dose independent rect. 22 8
279 993.82 radiation 1.0 14400 < th dose independent rect. 20 10
307 994.37 radiation 1.0 14400 > th dose independent rect. 16 3
332 994.79 radiation 1.0 14400 > th dose independent rect. 9 21
336 995.01 humidity 80.0 43200 < th dose independent rect. 11 8
366 995.77 precipitation 0.1 43200 > th dose independent rect. 13 14
373 995.99 precipitation 0.1 43200 < th dose independent rect. 13 14
374 995.99 precipitation 0.1 43200 < th dose dependent rect. 13 14
402 996.75 humidity 80.0 43200 > th dose independent rect. 11 8
419 997.27 radiation 1.0 14400 < th dose independent rect. 9 21
439 997.74 precipitation 0.1 43200 < th dose independent rect. 13 11
440 997.74 precipitation 0.1 43200 < th dose dependent rect. 13 11
442 997.77 radiation 1.0 14400 > th dose dependent rect. 17 14
444 997.83 humidity 90.0 43200 > th dose independent sin 17 NA
464 998.26 precipitation 0.1 43200 > th dose independent rect. 13 11
531 999.37 radiation 1.0 14400 < th dose independent rect. 4 6
535 999.42 radiation 1.0 14400 < th dose independent rect. 17 8
536 999.44 radiation 1.0 14400 > th dose independent rect. 5 5
554 999.62 radiation 1.0 14400 < th dose independent rect. 17 2
559 999.67 radiation 1.0 14400 < th dose independent rect. 4 14
563 999.70 radiation 1.0 14400 < th dose independent rect. 17 6
567 999.73 radiation 1.0 14400 < th dose independent rect. 17 4
578 999.79 radiation 1.0 14400 < th dose independent rect. 22 12
579 999.79 radiation 1.0 14400 < th dose independent rect. 24 18
580 999.80 radiation 1.0 14400 < th dose independent rect. 22 20
581 999.80 radiation 1.0 14400 < th dose independent rect. 20 22
583 999.81 radiation 1.0 14400 < th dose independent rect. 20 14
594 999.95 precipitation 0.1 43200 > th dose dependent rect. 13 15
595 999.97 humidity 90.0 43200 > th dose independent rect. 6 19
648 1000.63 radiation 1.0 14400 > th dose independent no NA NA
649 1000.63 radiation 1.0 14400 > th dose independent rect. 4 15
734 1001.02 precipitation 0.1 43200 > th dose independent sin 16 NA
755 1001.21 precipitation 0.1 43200 < th dose independent sin 16 NA
757 1001.21 precipitation 0.1 43200 < th dose dependent sin 16 NA
775 1001.58 radiation 1.0 14400 < th dose independent rect. 4 21
779 1001.61 radiation 1.0 14400 < th dose independent rect. 4 19
802 1001.70 radiation 1.0 14400 < th dose independent rect. 24 23
808 1001.73 radiation 1.0 14400 < th dose independent no NA NA
905 1003.01 precipitation 0.1 43200 > th dose dependent rect. 15 13
963 1003.91 humidity 90.0 43200 > th dose dependent rect. 5 19
996 1004.57 humidity 80.0 43200 > th dose dependent rect. 10 12