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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0519100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant-specific FAD-dependent oxidoreductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0803) R2 : 0.386
β1 : 3.97 (0.74) R2dD : 3.56 R2D : -4.06
β2 : -- (--) R2dC : -- R2C : --
β3 : -12.9 (2.74) R2dE : 17.2 R2E : -22.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 139 (26.1) R2dD*E : 24.8 R2D*E : -19.3
γ1 : 0.125 (0.0462) R2dN8 : 0.0131 R2N8 : -0.633
σ : 0.403
deviance : 74.92
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.1
memory length : 5027
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.92
open length of G : 0.783

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.47 0.411 2.69 4.33 0.157 -12.5 -0.412 135 0.142 4.01 30.1 4704 7.92 0.9
254.61 0.743 3.25 0.123 0.111 -11.8 0.254 -- 0.0437 10.4 31.98 85 6.75 2.97
74.15 0.401 2.7 4.37 0.164 -12.8 -- 138 0.15 4.71 29.98 4296 7.93 0.783
119.18 0.508 3.18 0.151 0.188 -0.195 -- -- 0.0658 3.6 31.99 90 7.54 2.13
74.92 0.403 2.75 3.97 -- -12.9 -- 139 0.125 -- 30.1 5027 7.92 0.783
118.78 0.511 3.17 0.13 0.201 -- -0.32 -- 0.0665 4.39 -- -- -- --
119.05 0.511 3.17 0.133 0.2 -- -- -- 0.0682 4.67 -- -- -- --
121.07 0.515 3.18 0.142 -- -0.335 -- -- 0.0726 -- 29.06 5256 7.6 0.541
119.44 0.509 3.18 -- 0.204 -0.276 -- -- 0.0511 4.67 31.88 116 8.65 1.53
121.18 0.514 3.17 0.141 -- -- -- -- 0.0734 -- -- -- -- --
119.52 0.511 3.18 -- 0.203 -- -- -- 0.0534 4.66 -- -- -- --
87.15 0.435 3.17 -- -- 1.5 -- -- 0.133 -- 30.6 1538 8.4 0.0837
121.7 0.515 3.18 -- -- -- -- -- 0.0578 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.68 temperature 30 4320 > th dose dependent rect. 8 1
29 90.81 temperature 30 4320 > th dose independent rect. 8 1
43 94.13 temperature 30 4320 < th dose independent rect. 3 6
48 94.37 temperature 30 4320 < th dose independent rect. 19 14
54 94.68 temperature 30 4320 < th dose independent rect. 8 1
71 97.23 wind 1 1440 < th dose dependent rect. 7 1
73 99.93 wind 1 1440 < th dose independent rect. 7 1
75 101.08 wind 1 1440 > th dose independent rect. 7 1
155 105.14 wind 1 270 < th dose dependent rect. 2 1
158 105.97 radiation 10 4320 < th dose independent rect. 16 15
213 107.07 radiation 10 4320 > th dose independent rect. 16 15
218 107.21 radiation 10 4320 > th dose independent rect. 17 1
241 107.29 temperature 30 4320 > th dose dependent rect. 11 1
248 107.48 radiation 10 4320 > th dose dependent rect. 16 15
253 107.69 radiation 10 4320 < th dose independent rect. 16 7
256 107.70 radiation 10 4320 < th dose independent rect. 16 4
281 107.96 wind 1 90 < th dose independent rect. 23 2
320 108.16 radiation 10 4320 < th dose independent sin 13 NA
324 108.22 temperature 30 4320 > th dose independent sin 9 NA
337 108.26 radiation 1 4320 > th dose dependent rect. 17 13
351 108.31 temperature 30 4320 > th dose dependent sin 8 NA
355 108.40 radiation 40 4320 < th dose dependent rect. 18 12
356 108.40 radiation 30 4320 > th dose dependent rect. 14 19
392 108.58 temperature 30 4320 < th dose independent sin 9 NA
411 108.81 radiation 40 4320 < th dose dependent rect. 3 3
422 108.93 radiation 10 4320 > th dose independent sin 13 NA
427 108.98 wind 5 1440 < th dose independent rect. 14 1
445 109.06 radiation 40 1440 < th dose independent rect. 3 6
450 109.11 radiation 40 4320 < th dose dependent rect. 1 5
455 109.14 wind 5 1440 > th dose independent rect. 14 2
474 109.17 radiation 1 4320 > th dose dependent rect. 4 2
484 109.20 radiation 10 4320 > th dose dependent rect. 14 19
485 109.21 radiation 40 1440 < th dose independent rect. 16 17
498 109.30 radiation 40 4320 > th dose independent rect. 14 19
499 109.31 radiation 1 4320 > th dose dependent rect. 17 2
524 109.32 radiation 40 4320 < th dose independent rect. 14 19
593 109.45 radiation 30 4320 > th dose dependent rect. 8 1
632 109.56 radiation 30 4320 < th dose dependent rect. 22 8
634 109.56 radiation 20 4320 < th dose dependent rect. 16 15
637 109.57 radiation 10 4320 < th dose dependent rect. 22 8
641 109.60 radiation 40 4320 > th dose independent rect. 14 2
660 109.61 radiation 30 4320 > th dose dependent rect. 14 2
691 109.67 radiation 40 4320 < th dose independent rect. 14 16
700 109.68 radiation 40 4320 < th dose independent rect. 14 10
707 109.68 radiation 40 4320 < th dose dependent rect. 16 15
709 109.69 radiation 40 4320 < th dose independent rect. 14 7
721 109.73 radiation 40 4320 < th dose independent rect. 14 1
731 109.75 wind 1 43200 < th dose dependent rect. 6 3
745 109.76 radiation 10 4320 < th dose independent rect. 3 4
758 109.80 radiation 10 4320 < th dose independent rect. 19 12
766 109.83 radiation 10 4320 < th dose independent rect. 22 9
792 109.84 radiation 40 4320 < th dose dependent rect. 14 19
793 109.85 temperature 30 4320 > th dose independent rect. 11 1
819 109.92 radiation 10 4320 > th dose dependent sin 13 NA
826 109.95 wind 1 4320 < th dose dependent rect. 2 6
839 109.96 temperature 30 4320 < th dose independent rect. 11 1
859 109.98 radiation 40 4320 < th dose dependent rect. 17 7
863 110.00 wind 1 43200 > th dose independent rect. 3 9
879 110.04 radiation 40 4320 < th dose dependent rect. 17 4
912 110.09 radiation 40 1440 > th dose independent rect. 8 1
930 110.09 radiation 40 1440 < th dose independent rect. 22 11
964 110.11 wind 1 43200 > th dose independent rect. 24 11
975 110.12 radiation 20 4320 < th dose dependent sin 13 NA
999 110.16 radiation 40 4320 < th dose dependent sin 13 NA