FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0124400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0174) R2 : 0.00428
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0513 (0.0366) R2dN8 : 0.00553 R2N8 : 0.00428
σ : 0.327
deviance : 49.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.93 0.315 3.16 0.976 0.177 -0.524 -0.142 4.45 0.0931 7.87 30.15 1487 -- --
46.52 0.32 3.26 0.117 0.2 0.0788 -0.147 -- 0.0687 7.64 30.15 1487 -- --
44.89 0.312 3.16 0.949 0.18 -0.548 -- 4.68 0.0719 8.06 30.24 1533 -- --
46.56 0.32 3.26 0.113 0.201 0.0858 -- -- 0.0694 7.76 30.24 1533 -- --
46.53 0.318 3.16 0.975 -- -0.563 -- 4.7 0.0771 -- 30.18 2688 -- --
46.7 0.32 3.26 0.125 0.193 -- -0.145 -- 0.0622 7.92 -- -- -- --
46.76 0.32 3.26 0.122 0.192 -- -- -- 0.0626 8.1 -- -- -- --
48.51 0.324 3.27 0.155 -- -0.0641 -- -- 0.0564 -- 34.1 1918 -- --
46.9 0.321 3.26 -- 0.203 0.0971 -- -- 0.0578 7.68 30.24 1533 -- --
48.79 0.326 3.27 0.123 -- -- -- -- 0.0649 -- -- -- -- --
47.15 0.321 3.26 -- 0.193 -- -- -- 0.049 8.05 -- -- -- --
49 0.326 3.27 -- -- -0.0591 -- -- 0.0394 -- 34.17 1973 -- --
49.19 0.327 3.27 -- -- -- -- -- 0.0513 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.90 atmosphere 995.0 720 > th dose independent rect. 7 8
2 42.96 humidity 80.0 14400 < th dose dependent rect. 1 8
9 43.25 wind 9.0 720 < th dose independent rect. 19 8
12 43.45 temperature 10.0 720 > th dose independent rect. 19 8
13 43.45 temperature 30.0 720 < th dose independent rect. 19 8
14 43.45 humidity 50.0 720 > th dose independent rect. 19 8
15 43.45 atmosphere 995.0 720 > th dose independent rect. 19 8
16 43.45 radiation 1.0 720 < th dose independent rect. 19 8
21 43.45 temperature 10.0 720 > th dose independent rect. 3 16
22 43.45 radiation 10.0 720 < th dose dependent rect. 19 8
28 43.49 temperature 10.0 720 > th dose independent rect. 7 8
29 43.49 atmosphere 1015.0 720 < th dose independent rect. 7 8
30 43.49 temperature 10.0 720 > th dose independent rect. 15 16
36 43.64 precipitation 0.1 720 < th dose independent rect. 19 8
37 43.64 precipitation 0.1 720 < th dose dependent rect. 19 8
39 43.66 humidity 90.0 90 < th dose independent rect. 2 5
40 43.67 wind 9.0 720 < th dose independent rect. 15 16
43 43.72 precipitation 0.1 720 < th dose independent rect. 7 8
44 43.72 precipitation 0.1 720 < th dose dependent rect. 7 8
48 43.84 radiation 40.0 720 < th dose independent rect. 15 16
49 43.85 humidity 90.0 90 < th dose dependent rect. 2 5
51 43.90 atmosphere 1015.0 720 < th dose independent rect. 3 16
52 43.92 humidity 70.0 14400 > th dose independent rect. 8 1
53 43.93 atmosphere 1000.0 10 > th dose independent rect. 8 22
54 43.94 precipitation 0.1 720 < th dose independent rect. 15 16
55 43.94 precipitation 0.1 720 < th dose dependent rect. 15 16
62 44.06 wind 9.0 14400 > th dose dependent rect. 13 1
69 44.13 humidity 70.0 14400 < th dose independent rect. 20 14
70 44.14 wind 3.0 14400 < th dose independent rect. 19 1
71 44.14 humidity 70.0 14400 < th dose independent rect. 7 3
83 44.15 humidity 70.0 14400 < th dose independent rect. 8 1
85 44.16 humidity 70.0 14400 > th dose independent rect. 4 5
86 44.16 humidity 70.0 14400 > th dose independent rect. 24 9
92 44.17 humidity 70.0 14400 > th dose independent rect. 6 3
102 44.18 wind 3.0 14400 > th dose independent rect. 19 1
112 44.20 wind 5.0 14400 < th dose dependent rect. 11 1
120 44.27 atmosphere 1000.0 720 > th dose independent rect. 21 14
124 44.30 wind 3.0 14400 > th dose independent rect. 10 1
125 44.30 atmosphere 1000.0 30 > th dose independent rect. 3 23
128 44.31 atmosphere 995.0 720 > th dose independent rect. 23 16
133 44.34 radiation 40.0 10 < th dose independent rect. 8 22
137 44.38 wind 1.0 14400 > th dose dependent rect. 11 1
138 44.38 wind 1.0 14400 < th dose dependent rect. 6 1
153 44.40 atmosphere 995.0 720 > th dose independent rect. 3 16
157 44.41 atmosphere 1005.0 10 > th dose dependent rect. 2 2
161 44.43 wind 5.0 14400 < th dose dependent rect. 19 1
167 44.45 atmosphere 1005.0 30 > th dose dependent rect. 2 6
170 44.48 radiation 10.0 30 > th dose independent rect. 6 2
184 44.48 temperature 30.0 1440 > th dose independent rect. 14 21
187 44.49 radiation 1.0 720 > th dose independent rect. 7 8
195 44.52 wind 3.0 14400 < th dose independent rect. 10 1
197 44.52 temperature 30.0 1440 < th dose independent rect. 14 21
199 44.52 humidity 70.0 4320 > th dose dependent rect. 3 7
202 44.53 atmosphere 1000.0 720 > th dose independent rect. 23 10
209 44.54 temperature 30.0 1440 < th dose independent rect. 15 19
214 44.55 humidity 80.0 14400 < th dose dependent sin 8 NA
216 44.55 temperature 30.0 1440 > th dose dependent rect. 15 1
224 44.57 humidity 90.0 90 < th dose independent rect. 2 2
228 44.58 temperature 30.0 1440 > th dose independent rect. 15 4
233 44.58 wind 9.0 720 < th dose independent rect. 7 8
254 44.60 temperature 30.0 1440 > th dose independent rect. 15 2
257 44.60 wind 5.0 14400 < th dose independent rect. 10 7
264 44.61 temperature 30.0 1440 < th dose independent rect. 15 14
270 44.62 wind 9.0 4320 < th dose independent rect. 7 2
273 44.62 wind 5.0 14400 > th dose independent rect. 10 7
276 44.62 atmosphere 1000.0 10 > th dose independent rect. 10 20
281 44.63 temperature 30.0 1440 < th dose independent rect. 15 3
288 44.63 temperature 30.0 1440 < th dose independent rect. 15 9
307 44.64 temperature 30.0 1440 < th dose independent rect. 15 7
313 44.64 radiation 1.0 720 < th dose independent rect. 21 8
319 44.64 atmosphere 1000.0 10 > th dose independent rect. 8 12
325 44.65 wind 5.0 14400 < th dose independent rect. 10 5
333 44.65 humidity 80.0 4320 > th dose dependent rect. 7 1
335 44.65 wind 3.0 14400 > th dose dependent rect. 10 5
340 44.65 radiation 10.0 720 < th dose dependent rect. 21 8
354 44.67 humidity 90.0 4320 < th dose independent rect. 3 6
356 44.67 atmosphere 1000.0 90 > th dose independent rect. 8 11
360 44.67 temperature 30.0 90 < th dose dependent rect. 6 1
362 44.67 humidity 60.0 14400 < th dose dependent rect. 12 1
378 44.69 temperature 30.0 1440 < th dose independent sin 12 NA
394 44.69 humidity 50.0 4320 > th dose dependent rect. 23 14
395 44.70 wind 9.0 14400 > th dose independent rect. 13 1
401 44.70 wind 5.0 14400 > th dose independent rect. 10 5
408 44.70 humidity 80.0 90 < th dose dependent rect. 2 1
409 44.70 humidity 90.0 10 < th dose dependent rect. 3 1
417 44.71 temperature 30.0 1440 > th dose independent sin 12 NA
418 44.71 humidity 90.0 10 < th dose independent rect. 3 1
420 44.71 humidity 80.0 90 < th dose independent rect. 24 3
427 44.71 humidity 80.0 90 < th dose dependent rect. 24 3
432 44.72 humidity 60.0 14400 < th dose independent rect. 11 1
437 44.72 atmosphere 995.0 720 > th dose independent rect. 13 6
439 44.72 atmosphere 1000.0 90 < th dose independent rect. 6 20
462 44.73 temperature 10.0 720 > th dose independent rect. 9 8
463 44.73 atmosphere 1015.0 720 < th dose independent rect. 9 8
465 44.73 temperature 10.0 720 > th dose independent rect. 17 16
466 44.73 atmosphere 995.0 720 > th dose independent rect. 7 18
481 44.74 atmosphere 1000.0 720 > th dose independent rect. 7 2
486 44.74 temperature 10.0 720 > th dose independent rect. 21 8
487 44.74 temperature 30.0 720 < th dose independent rect. 21 8
488 44.74 humidity 50.0 720 > th dose independent rect. 21 8
491 44.74 atmosphere 1000.0 720 > th dose independent rect. 3 8
492 44.74 atmosphere 995.0 720 > th dose independent rect. 21 8
496 44.74 temperature 10.0 720 > th dose independent rect. 5 16
498 44.74 radiation 1.0 90 > th dose dependent rect. 6 1
545 44.76 humidity 90.0 4320 < th dose dependent rect. 12 1
563 44.77 wind 9.0 14400 < th dose independent rect. 13 1
570 44.77 humidity 50.0 4320 > th dose dependent sin 6 NA
596 44.78 temperature 15.0 10 > th dose independent rect. 8 22
619 44.79 radiation 40.0 10 < th dose independent rect. 3 9
627 44.79 humidity 50.0 4320 > th dose dependent rect. 11 2
676 44.80 wind 7.0 14400 < th dose dependent rect. 9 6
692 44.81 atmosphere 1000.0 10 > th dose independent rect. 18 12
751 44.83 temperature 25.0 90 < th dose independent rect. 6 1
776 44.84 wind 1.0 14400 < th dose independent rect. 6 1
778 44.84 humidity 50.0 14400 > th dose independent rect. 15 1
789 44.84 atmosphere 1005.0 10 > th dose dependent rect. 6 2
807 44.85 humidity 90.0 4320 > th dose independent rect. 3 1
834 44.86 temperature 20.0 30 > th dose independent rect. 3 3
843 44.86 wind 1.0 14400 < th dose dependent rect. 4 4
877 44.87 radiation 40.0 10 < th dose independent rect. 10 20
906 44.88 humidity 90.0 90 < th dose dependent rect. 6 1
909 44.88 temperature 30.0 1440 > th dose dependent rect. 14 5
920 44.88 humidity 90.0 4320 < th dose dependent rect. 3 12
943 44.89 precipitation 0.1 720 < th dose independent rect. 9 8
944 44.89 precipitation 0.1 720 < th dose independent rect. 21 8
948 44.89 atmosphere 995.0 720 > th dose independent rect. 15 16
949 44.89 radiation 40.0 720 < th dose independent rect. 17 16
950 44.89 atmosphere 1000.0 10 > th dose independent rect. 10 22
951 44.89 atmosphere 995.0 720 > th dose independent rect. 21 22
956 44.89 atmosphere 995.0 720 > th dose dependent rect. 8 1
958 44.89 temperature 20.0 30 > th dose dependent rect. 3 3
960 44.89 precipitation 0.1 720 < th dose dependent rect. 9 8
961 44.89 precipitation 0.1 720 < th dose dependent rect. 21 8
977 44.90 humidity 80.0 14400 < th dose independent sin 6 NA