BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0976300 Os01g0976300|AK111354
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0976300 Heavy metal transport/detoxification protein d... 259 6e-70
Os03g0819400 Heavy metal transport/detoxification protein d... 101 4e-22
Os08g0405700 Similar to Copper chaperone homolog CCH 91 6e-19
Os01g0719600 Heavy metal transport/detoxification protein d... 79 2e-15
Os05g0534500 Phosphatidylinositol-specific phospholipase C,... 79 3e-15
Os08g0205400 Heavy metal transport/detoxification protein d... 70 1e-12
>Os01g0976300 Heavy metal transport/detoxification protein domain containing
protein
Length = 204
Score = 259 bits (663), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/182 (77%), Positives = 141/182 (77%)
Query: 1 MASVVLKDLNKRLLGLSCSSAASTSIVLSGHSPPHLRDPARXXXXXXXXXXXXXXXXQQL 60
MASVVLKDLNKRLLGLSCSSAASTSIVLSGHSPPHLRDPAR QQL
Sbjct: 1 MASVVLKDLNKRLLGLSCSSAASTSIVLSGHSPPHLRDPARTSNSSKKKKTKANKSKQQL 60
Query: 61 VSPASSSRFLLNSSRMQPSADELPPPFVIPXXXXXXXXXXXXXXXXXXXXXXXXXKRESS 120
VSPASSSRFLLNSSRMQPSADELPPPFVIP KRESS
Sbjct: 61 VSPASSSRFLLNSSRMQPSADELPPPFVIPVAVAAAAEENEIVAAAVEGGGGEEEKRESS 120
Query: 121 SQVEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSK 180
SQVEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSK
Sbjct: 121 SQVEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSK 180
Query: 181 IK 182
IK
Sbjct: 181 IK 182
>Os03g0819400 Heavy metal transport/detoxification protein domain containing
protein
Length = 203
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 10/124 (8%)
Query: 59 QLVSPASSSRFLLNSSRMQPSADELPPPFVIPXXXXXXXXXXXXXXXXXXXXXXXXXKRE 118
+LVSPA SSR+LL+S +A+E+ +
Sbjct: 77 ELVSPAGSSRYLLSSRAA--AAEEI--------QEVEASAAPAVDAKVVREEQAGSDVKN 126
Query: 119 SSSQVEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAV 178
+ +Q +VVVL+VSLHCK CAGKVKKH++KMEGVTS +ID A KKVTVVG VTPL VL +V
Sbjct: 127 TLTQEQVVVLKVSLHCKACAGKVKKHLAKMEGVTSFNIDFAAKKVTVVGDVTPLGVLNSV 186
Query: 179 SKIK 182
SK+K
Sbjct: 187 SKVK 190
>Os08g0405700 Similar to Copper chaperone homolog CCH
Length = 205
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 54/60 (90%)
Query: 123 VEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKIK 182
++VVV++V++HC+GCAGKV+KHISKMEGVTS ID+ +KKVTV+GHV+P VL ++SK+K
Sbjct: 139 LQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVK 198
>Os01g0719600 Heavy metal transport/detoxification protein domain containing
protein
Length = 142
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 126 VVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKI 181
V LRVS+HC GCA KV+KHISKM+GVTS ++D+ +KKV V+G +TP VL +VSK+
Sbjct: 72 VELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKV 127
>Os05g0534500 Phosphatidylinositol-specific phospholipase C, X region domain
containing protein
Length = 160
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 126 VVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKIK 182
V L+VS+HC GCA KV+KHIS+MEGVT ++D+ KKV V G VTPL VL ++SK+K
Sbjct: 84 VELKVSMHCNGCAKKVQKHISRMEGVTWFEVDLEKKKVVVTGDVTPLEVLQSISKVK 140
>Os08g0205400 Heavy metal transport/detoxification protein domain containing
protein
Length = 81
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%)
Query: 124 EVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSK 180
E VVLRV + C+GC G VK+ + KM+GV S D+DI +KVTV G+VTP +VL VSK
Sbjct: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSK 59
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,547,056
Number of extensions: 120507
Number of successful extensions: 453
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)