BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0933500 Os01g0933500|AY304538
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0933500 Conserved hypothetical protein 203 2e-53
Os01g0257300 Conserved hypothetical protein 144 1e-35
Os02g0460200 Conserved hypothetical protein 123 4e-29
Os07g0671000 Conserved hypothetical protein 108 8e-25
Os04g0282400 Similar to FPF1 protein-like (RAA1) 102 6e-23
Os03g0346200 Conserved hypothetical protein 79 9e-16
>Os01g0933500 Conserved hypothetical protein
Length = 127
Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/127 (81%), Positives = 103/127 (81%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
MSGVWVFRNGVVKLVENPPASANS IRRKALLHMPTGEVVTSYASLE
Sbjct: 1 MSGVWVFRNGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASLE 60
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
RKLAALGWERYYS MMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD
Sbjct: 61 RKLAALGWERYYSGGGGAAAAAAMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
Query: 121 AFRVIDV 127
AFRVIDV
Sbjct: 121 AFRVIDV 127
>Os01g0257300 Conserved hypothetical protein
Length = 109
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 87/126 (69%), Gaps = 18/126 (14%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
MSGVWVF+NGVV+LVE A+A + RRKAL+H P+G+VV+SYA+LE
Sbjct: 1 MSGVWVFKNGVVRLVEKQQATAGTAVAGG----------RRKALVHTPSGQVVSSYAALE 50
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
+L ALGWERYY + QFHKR S+DLISLP DFS F SVHMYDIVVKNRD
Sbjct: 51 ARLTALGWERYYEDPS--------LFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRD 102
Query: 121 AFRVID 126
+FRV+D
Sbjct: 103 SFRVVD 108
>Os02g0460200 Conserved hypothetical protein
Length = 122
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 14/126 (11%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
M+GVWVF++G+V+ VENP + +S RRK L+H+P+GEVV SY LE
Sbjct: 1 MAGVWVFKDGIVRRVENPGSEESSSAGDGGGG------GRRKVLVHVPSGEVVASYEVLE 54
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
R+L LGWERY + +LQFH+RS+V LIS+P+DFS+F VHMYDIVVK R+
Sbjct: 55 RRLRELGWERYLTDP--------CLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRN 106
Query: 121 AFRVID 126
F V D
Sbjct: 107 VFEVRD 112
>Os07g0671000 Conserved hypothetical protein
Length = 105
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 76/128 (59%), Gaps = 30/128 (23%)
Query: 2 SGVWVFRN-GVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
GVWVFRN GV++L E + RKAL+H+ T EV+ S +LE
Sbjct: 4 GGVWVFRNNGVMELEEQATS--------------------RKALVHVATSEVIRSTEALE 43
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKR-SSVDLISLPKDFSQFGSVHMYDIVVKNR 119
R+L ALGWERYY LQ H+R S DLIS+P+DFS+F S HMYD+VVKNR
Sbjct: 44 RRLGALGWERYYEDRA--------TLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNR 95
Query: 120 DAFRVIDV 127
D F+V+D+
Sbjct: 96 DHFKVVDL 103
>Os04g0282400 Similar to FPF1 protein-like (RAA1)
Length = 118
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 16/126 (12%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
M+GVWVF +G+V+ ++ S K L+H+P+ EVVTSY LE
Sbjct: 1 MAGVWVFEDGMVRRADSEAPSRGRGVGGGGGGG--------KVLVHVPSSEVVTSYEVLE 52
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
R+L LGWERY + +LQFH+RS+V LIS+P+DFS+ VHMYD+VVK R+
Sbjct: 53 RRLRELGWERYLNDP--------CLLQFHQRSTVHLISVPRDFSRLKLVHMYDVVVKTRN 104
Query: 121 AFRVID 126
F V D
Sbjct: 105 VFEVRD 110
>Os03g0346200 Conserved hypothetical protein
Length = 68
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 9/75 (12%)
Query: 53 VTSYASLERKLAALGWERYYSXXXXXXXXXXMMLQFHKRSS-VDLISLPKDFSQFGSVHM 111
+ S +LER+LA LGWERYY ++Q H+R DLISLP+DF++F S HM
Sbjct: 1 MGSLQALERRLAGLGWERYYEDRA--------VVQLHRRDGGADLISLPRDFARFRSTHM 52
Query: 112 YDIVVKNRDAFRVID 126
YD+V+KNRD F+V+D
Sbjct: 53 YDVVLKNRDHFKVLD 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,307,025
Number of extensions: 81421
Number of successful extensions: 172
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)