Os03g0346200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0346200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.44 | 0.755 | 3.03 | -0.583 | 0.289 | -8.89 | -0.916 | 61.7 | -0.238 | 19.7 | 80 | 30 | 1 | 1 |
| 258.96 | 0.755 | 3.06 | -0.705 | 0.292 | 5.57 | -0.922 | -- | -0.234 | 19.6 | 80 | 30 | 1 | 1 |
| 260.8 | 0.758 | -10.2 | 55.8 | 0.292 | -6100 | -- | 26100 | -0.239 | 19.4 | 80 | 30 | 1.06 | 0.968 |
| 261.31 | 0.758 | 3.06 | -0.682 | 0.293 | 5.59 | -- | -- | -0.235 | 19.3 | 80 | 30 | 1 | 1 |
| 265.34 | 0.763 | -10.6 | 57.4 | -- | -6270 | -- | 26800 | -0.244 | -- | 80 | 30 | 1.06 | 0.968 |
| 289.89 | 0.798 | 3.06 | -0.662 | 0.288 | -- | -0.928 | -- | -0.245 | 19.7 | -- | -- | -- | -- |
| 292.31 | 0.801 | 3.06 | -0.64 | 0.287 | -- | -- | -- | -0.247 | 19.9 | -- | -- | -- | -- |
| 265.88 | 0.759 | 3.05 | -0.687 | -- | 5.57 | -- | -- | -0.24 | -- | 78.98 | 119 | 0.127 | 1.36 |
| 273.56 | 0.775 | 3.04 | -- | 0.3 | 5.45 | -- | -- | -0.16 | 19.2 | 78.95 | 39 | 0.625 | 1.47 |
| 296.8 | 0.805 | 3.06 | -0.643 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 303.1 | 0.814 | 3.05 | -- | 0.292 | -- | -- | -- | -0.176 | 19.8 | -- | -- | -- | -- |
| 278.32 | 0.78 | 3.04 | -- | -- | 5.43 | -- | -- | -0.164 | -- | 78.95 | 39 | 0.625 | 1.47 |
| 307.7 | 0.819 | 3.04 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.44 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 4 | 258.44 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 54 | 269.47 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 59 | 270.73 | humidity | 50 | 90 | < th | dose independent | rect. | 15 | 3 |
| 96 | 270.99 | humidity | 50 | 90 | < th | dose dependent | rect. | 15 | 3 |
| 214 | 271.69 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 240 | 272.07 | humidity | 50 | 90 | > th | dose independent | sin | 12 | NA |
| 242 | 272.09 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 267 | 272.37 | wind | 1 | 30 | < th | dose independent | rect. | 15 | 1 |
| 269 | 272.37 | wind | 1 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 273 | 272.49 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 293 | 273.63 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 3 |
| 302 | 273.71 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 2 |
| 329 | 274.01 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 336 | 274.22 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 339 | 274.32 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 1 |
| 353 | 274.52 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 12 |
| 376 | 274.79 | wind | 7 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 377 | 274.80 | wind | 7 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 400 | 275.00 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 18 |
| 466 | 275.18 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 1 |
| 647 | 276.23 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 744 | 276.67 | wind | 9 | 10 | < th | dose independent | sin | 14 | NA |
| 748 | 276.71 | wind | 9 | 10 | > th | dose independent | sin | 13 | NA |
| 753 | 276.76 | wind | 7 | 10 | > th | dose dependent | sin | 11 | NA |
| 765 | 276.84 | humidity | 50 | 270 | < th | dose independent | rect. | 11 | 1 |
| 784 | 276.84 | humidity | 50 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 802 | 276.85 | wind | 9 | 90 | > th | dose independent | sin | 12 | NA |
| 805 | 276.86 | wind | 1 | 30 | < th | dose dependent | rect. | 4 | 9 |
| 905 | 277.45 | radiation | 20 | 720 | > th | dose independent | rect. | 12 | 22 |
| 961 | 277.70 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 975 | 277.76 | wind | 9 | 90 | > th | dose dependent | sin | 12 | NA |