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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0257300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0478) R2 : 1.59e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00856 (0.101) R2dN8 : 2.05e-05 R2N8 : 1.59e-05
σ : 0.899
deviance : 371.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.64 0.875 3.24 0.181 0.413 -0.0504 0.394 4.1 0.0655 4.08 0.05595 1601 -- --
347.9 0.869 3.29 0.0287 0.397 0.999 0.729 -- 0.0726 3.97 -0.4644 1600 -- --
347.04 0.868 3.24 0.173 0.415 -0.0623 -- 4.15 0.0642 4.07 -0.0001803 1600 -- --
347.97 0.869 3.29 0.0372 0.414 1.08 -- -- 0.0788 4.1 -0.4213 1600 -- --
356.42 0.879 3.24 0.199 -- -0.0388 -- 3.98 0.0738 -- -6.514e-06 1600 -- --
359.93 0.889 3.3 0.277 0.398 -- 0.391 -- 0.0321 3.87 -- -- -- --
360.37 0.889 3.3 0.272 0.401 -- -- -- 0.0298 3.93 -- -- -- --
357.21 0.88 3.29 0.0595 -- 1.06 -- -- 0.0886 -- -0.2977 1600 -- --
348.01 0.869 3.29 -- 0.414 1.1 -- -- 0.0758 4.11 -0.4203 1600 -- --
369.16 0.898 3.3 0.288 -- -- -- -- 0.0405 -- -- -- -- --
362.32 0.89 3.31 -- 0.406 -- -- -- -0.000422 3.92 -- -- -- --
357.3 0.88 3.29 -- -- 1.09 -- -- 0.0839 -- -0.5306 1600 -- --
371.35 0.899 3.31 -- -- -- -- -- 0.00856 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 337.77 precipitation 0.1 270 > th dose independent rect. 2 7
7 338.01 precipitation 0.1 270 > th dose dependent rect. 2 7
16 338.20 precipitation 0.1 270 > th dose independent rect. 2 3
23 338.37 precipitation 0.1 270 > th dose dependent rect. 1 4
24 338.37 precipitation 0.1 270 > th dose dependent rect. 22 11
60 338.74 precipitation 0.1 270 > th dose dependent rect. 22 7
95 339.45 wind 1.0 270 < th dose independent rect. 2 2
131 340.65 precipitation 0.1 720 < th dose independent rect. 2 9
132 340.65 precipitation 0.1 720 < th dose dependent rect. 2 9
137 341.20 precipitation 0.1 270 < th dose independent sin 6 NA
138 341.20 precipitation 0.1 270 < th dose dependent sin 6 NA
139 341.26 precipitation 0.1 270 > th dose independent sin 6 NA
141 341.30 precipitation 0.1 270 > th dose dependent sin 6 NA
142 341.39 wind 3.0 270 < th dose dependent rect. 2 1
146 341.60 radiation 10.0 30 < th dose independent rect. 2 13
168 342.49 wind 1.0 43200 > th dose independent rect. 20 10
171 342.58 wind 1.0 43200 < th dose independent rect. 20 10
174 342.65 wind 1.0 43200 > th dose independent rect. 18 13
178 342.72 wind 1.0 43200 > th dose independent rect. 22 8
180 342.74 wind 1.0 43200 < th dose independent rect. 18 13
181 342.74 radiation 10.0 30 < th dose independent rect. 2 16
187 342.84 wind 1.0 43200 < th dose independent rect. 22 8
195 342.94 atmosphere 1005.0 30 > th dose dependent rect. 17 1
236 343.77 radiation 1.0 720 > th dose independent rect. 7 8
239 343.80 precipitation 0.1 10 > th dose independent rect. 4 4
257 343.91 precipitation 0.1 1440 > th dose dependent rect. 18 2
272 344.14 precipitation 0.1 720 < th dose independent rect. 23 15
273 344.14 precipitation 0.1 720 < th dose dependent rect. 23 15
288 344.30 precipitation 0.1 1440 < th dose independent rect. 18 2
289 344.30 precipitation 0.1 1440 < th dose dependent rect. 18 2
292 344.36 wind 1.0 43200 < th dose independent sin 11 NA
318 344.52 precipitation 0.1 1440 > th dose dependent rect. 19 9
335 344.64 radiation 10.0 30 < th dose independent sin 3 NA
366 344.81 precipitation 0.1 720 < th dose independent rect. 2 17
367 344.81 precipitation 0.1 720 < th dose dependent rect. 2 17
376 344.85 precipitation 0.1 1440 > th dose independent rect. 18 10
387 344.90 radiation 1.0 4320 < th dose dependent rect. 22 7
389 344.91 precipitation 0.1 1440 < th dose independent rect. 18 10
390 344.91 precipitation 0.1 1440 < th dose dependent rect. 18 10
397 344.95 radiation 1.0 4320 < th dose dependent rect. 19 10
437 345.11 radiation 10.0 30 < th dose independent rect. 2 19
445 345.13 precipitation 0.1 1440 > th dose dependent rect. 18 17
449 345.14 precipitation 0.1 1440 > th dose dependent rect. 18 13
458 345.19 wind 9.0 720 < th dose independent rect. 14 17
499 345.35 radiation 10.0 30 < th dose independent rect. 2 10
511 345.41 radiation 1.0 4320 < th dose dependent rect. 4 1
529 345.52 precipitation 0.1 720 < th dose independent rect. 3 1
531 345.52 precipitation 0.1 720 < th dose dependent rect. 3 1
533 345.53 precipitation 0.1 720 < th dose independent rect. 21 8
534 345.53 precipitation 0.1 720 < th dose dependent rect. 21 8
544 345.59 humidity 50.0 90 < th dose independent rect. 15 20
563 345.66 precipitation 0.1 1440 < th dose independent rect. 18 17
566 345.66 precipitation 0.1 1440 < th dose dependent rect. 18 17
571 345.70 precipitation 0.1 1440 > th dose independent rect. 18 17
600 345.78 humidity 50.0 90 < th dose dependent sin 11 NA
610 345.81 precipitation 0.1 1440 < th dose independent rect. 22 6
612 345.81 precipitation 0.1 1440 < th dose dependent rect. 22 6
617 345.86 wind 1.0 43200 > th dose independent sin 11 NA
618 345.86 precipitation 0.1 1440 > th dose independent rect. 18 2
631 345.94 humidity 50.0 30 < th dose independent sin 11 NA
648 346.06 wind 1.0 43200 < th dose dependent rect. 22 10
653 346.10 wind 5.0 30 < th dose independent rect. 6 20
657 346.13 radiation 10.0 30 < th dose independent rect. 19 23
658 346.13 wind 7.0 43200 < th dose dependent rect. 23 5
660 346.15 radiation 1.0 4320 > th dose independent rect. 18 1
674 346.18 wind 1.0 43200 > th dose dependent rect. 23 5
678 346.24 wind 7.0 720 < th dose independent rect. 19 7
685 346.29 radiation 10.0 30 < th dose independent rect. 2 8
693 346.33 wind 9.0 270 < th dose independent rect. 3 23
694 346.33 wind 1.0 43200 < th dose dependent rect. 4 2
707 346.38 wind 5.0 43200 < th dose dependent rect. 22 7
723 346.46 radiation 10.0 30 < th dose independent rect. 17 22
743 346.56 precipitation 0.1 10 < th dose independent rect. 3 23
745 346.56 precipitation 0.1 10 < th dose dependent rect. 3 23
749 346.60 precipitation 0.1 1440 < th dose independent rect. 19 7
751 346.60 wind 1.0 10 < th dose dependent rect. 2 1
752 346.60 precipitation 0.1 1440 < th dose dependent rect. 19 7
755 346.62 radiation 10.0 30 < th dose independent rect. 8 23
758 346.62 wind 1.0 43200 < th dose dependent rect. 18 14
781 346.68 radiation 10.0 30 < th dose independent rect. 2 5
812 346.76 humidity 50.0 90 < th dose dependent rect. 15 20
814 346.78 wind 1.0 43200 > th dose independent rect. 3 3
839 346.85 wind 1.0 43200 < th dose dependent rect. 20 12
847 346.88 wind 1.0 1440 < th dose dependent rect. 18 1
860 346.94 wind 7.0 720 < th dose independent rect. 8 7
864 346.96 radiation 10.0 14400 < th dose independent rect. 11 1
867 346.97 precipitation 0.1 43200 > th dose independent rect. 18 2
876 346.99 precipitation 0.1 1440 > th dose independent rect. 18 7
886 347.03 wind 1.0 43200 < th dose independent rect. 3 3
887 347.04 radiation 1.0 720 < th dose dependent rect. 6 1
889 347.05 precipitation 0.1 43200 > th dose dependent rect. 18 2
898 347.08 radiation 1.0 720 > th dose independent rect. 18 20
914 347.13 humidity 90.0 1440 > th dose dependent rect. 18 3
915 347.14 wind 1.0 10 < th dose independent rect. 1 3
916 347.14 radiation 10.0 30 < th dose independent rect. 1 23
945 347.25 precipitation 0.1 43200 < th dose independent rect. 18 2
951 347.25 precipitation 0.1 43200 < th dose dependent rect. 18 2
973 347.32 wind 1.0 43200 > th dose independent rect. 5 1
978 347.33 wind 1.0 43200 < th dose independent rect. 19 1
979 347.35 radiation 10.0 30 < th dose independent rect. 11 23
985 347.37 wind 1.0 43200 < th dose independent rect. 5 1
993 347.39 humidity 50.0 30 < th dose independent rect. 15 3