BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0931100 Os01g0931100|AK068780
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0931100 Conserved hypothetical protein 887 0.0
Os05g0155700 Conserved hypothetical protein 369 e-102
Os11g0245600 363 e-100
Os11g0543500 Conserved hypothetical protein 345 6e-95
Os04g0404900 Conserved hypothetical protein 333 2e-91
Os02g0526000 Conserved hypothetical protein 314 1e-85
>Os01g0931100 Conserved hypothetical protein
Length = 488
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/488 (91%), Positives = 447/488 (91%)
Query: 1 MDGGGQGVARRHGAVAEEDPDRRRGDRSXXXXXXXXXXXXXXAPPPRRTSRRVASLDVFR 60
MDGGGQGVARRHGAVAEEDPDRRRGDRS APPPRRTSRRVASLDVFR
Sbjct: 1 MDGGGQGVARRHGAVAEEDPDRRRGDRSGKEGDDDGVDVDEKAPPPRRTSRRVASLDVFR 60
Query: 61 GLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLKRIPDXXXXX 120
GLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLKRIPD
Sbjct: 61 GLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLKRIPDRGRAV 120
Query: 121 XXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYLVVAVLEIVT 180
FWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYLVVAVLEIVT
Sbjct: 121 RRVVLRTLKLLFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYLVVAVLEIVT 180
Query: 181 KNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSDVKNPNFGKI 240
KNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSDVKNPNFGKI
Sbjct: 181 KNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSDVKNPNFGKI 240
Query: 241 LTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEGPFKTDSPAW 300
LTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEGPFKTDSPAW
Sbjct: 241 LTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEGPFKTDSPAW 300
Query: 301 CYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXXXXXXXXXXXHFS 360
CYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIM HFS
Sbjct: 301 CYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMGITLLILGLTLHFS 360
Query: 361 HAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMNAMLVYVMAA 420
HAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMNAMLVYVMAA
Sbjct: 361 HAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMNAMLVYVMAA 420
Query: 421 AGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVLFAQILFWALVAGLLH 480
AGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVLFAQILFWALVAGLLH
Sbjct: 421 AGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVLFAQILFWALVAGLLH 480
Query: 481 RARLYWKL 488
RARLYWKL
Sbjct: 481 RARLYWKL 488
>Os05g0155700 Conserved hypothetical protein
Length = 491
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/449 (42%), Positives = 273/449 (60%), Gaps = 13/449 (2%)
Query: 47 RRTSRRVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAI 106
R RRVASLDVFRGLTVA+MILVD AGG WP + H+PW G +ADFVMP FLFI+G++
Sbjct: 49 ERKPRRVASLDVFRGLTVAMMILVDDAGGAWPGMNHSPWLGVTVADFVMPAFLFIIGVSA 108
Query: 107 PLSLKRIPDXXXXXXXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRI 166
L K+ P+ G++LQGGY H +L+YG+D+ H+RW G+LQRI
Sbjct: 109 ALVFKKTPNKTVATKKAAIRAIKLFILGVILQGGYIHGRHNLTYGIDLDHIRWLGVLQRI 168
Query: 167 ALAYLVVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWD 226
A+ Y + A+ EI N D S S + YF +WIVA I +Y+ L+ G+YV +W+
Sbjct: 169 AIGYFLAAISEIWLVNNISVD---SAISFVKKYFMEWIVAVMISALYVGLLLGLYVSNWE 225
Query: 227 FRVSDVKN----PNFGKIL---TVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRR 279
F+V + P G + + CG RG L PPCNAVG++DR +LG NH+Y P ++R
Sbjct: 226 FKVQTSNSILTIPTPGNEIGMKMIQCGVRGSLGPPCNAVGFVDRVLLGENHLYKNPVYKR 285
Query: 280 HKDCTDDSPHEGPFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDR 339
K+C+ +SP GP ++P WC APF+PEGLLS+L A ++ +G+H+GHVLVH K H+ R
Sbjct: 286 TKECSVNSPDYGPLPPNAPDWCLAPFDPEGLLSTLMAAVTCFVGLHFGHVLVHCKDHSPR 345
Query: 340 LKQWSIMXXXXXXXXXXXHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLH 399
+ W + +P +K LYT SY+ +T G +G + + Y++VD++N+
Sbjct: 346 MLLWLLASTVLTVSGFLLQLL-GMPFSKPLYTVSYMLLTGGVSGFLLLLLYYIVDVINIK 404
Query: 400 YPFAPLKWTGMNAMLVYVMAAAGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVG 459
PF +W GMNA++VYV+AA IF + G+Y+ N LV + + + ++HS R G
Sbjct: 405 KPFILFQWMGMNALIVYVLAACEIFPTLVQGFYWRSPENNLVD-LTESLLQTIFHSKRWG 463
Query: 460 ILLYVLFAQILFWALVAGLLHRARLYWKL 488
L +V+ +I+FW L A LH +Y KL
Sbjct: 464 TLAFVVL-EIIFWCLAACFLHMKGIYLKL 491
>Os11g0245600
Length = 447
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/443 (44%), Positives = 256/443 (57%), Gaps = 49/443 (11%)
Query: 46 PRRTSRRVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMA 105
PR+ S+RVA+LD FRGLT+ LMILVD AGG + + H+PWNGC LADFVMPFFLFIVG+A
Sbjct: 54 PRKKSKRVAALDAFRGLTIVLMILVDDAGGAYERMDHSPWNGCTLADFVMPFFLFIVGVA 113
Query: 106 IPLSLKRIPDXXXXXXXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQR 165
I +LKR+P FWG+LLQGGYSHAPDDLSYGVDMK +RWCGILQR
Sbjct: 114 IAFALKRVPKLGAAVKKITIRTLKMLFWGLLLQGGYSHAPDDLSYGVDMKKIRWCGILQR 173
Query: 166 IALAYLVVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDW 225
IAL Y VVA++E T + S ++IF Y QW+ L IY+ + +YVPDW
Sbjct: 174 IALVYFVVALIEAFTTKVRPTTVRSGPYAIFHAYRWQWLGGFVALFIYMVTTFSLYVPDW 233
Query: 226 DFRVSDVKNPNFGKILTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTD 285
+ + + N GK TV C G++D + ++ R W + T
Sbjct: 234 SYVYHNDGDVNDGKQFTVLLAVFPD-HVQCGVRGHLDPACNAVGYV-DRVVWGINHLYT- 290
Query: 286 DSPHEGPFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSI 345
P W + F +++ ++ + D L W+
Sbjct: 291 -----------QPVWIRSKF----------------------NIIDSVRDNWDPL--WTC 315
Query: 346 MXXXXXXXXXXXHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPL 405
AIP+NKQLY+ SY+C TAGAAG+V FY L+D+ L PF L
Sbjct: 316 SRSF-----------QAIPINKQLYSLSYVCFTAGAAGVVLSAFYILIDVWGLRTPFLFL 364
Query: 406 KWTGMNAMLVYVMAAAGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVL 465
+W GMNAMLV+V+AA IF F+NGWYY+ NTLV W++KHVF+ VWHS R+G LLYV+
Sbjct: 365 EWIGMNAMLVFVLAAQAIFPAFVNGWYYDSPGNTLVSWIQKHVFINVWHSQRLGTLLYVI 424
Query: 466 FAQILFWALVAGLLHRARLYWKL 488
F +I+FW +V+G+LH+ +YWKL
Sbjct: 425 FGEIVFWGVVSGILHKLGIYWKL 447
>Os11g0543500 Conserved hypothetical protein
Length = 448
Score = 345 bits (884), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 242/396 (61%), Gaps = 3/396 (0%)
Query: 49 TSRRVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPL 108
T +R+ SLDVFRG+TVALMILVD GG P I H+PW+G LADFV PFFLFIVG+++
Sbjct: 52 TRQRLVSLDVFRGITVALMILVDDVGGIVPAISHSPWDGVTLADFVFPFFLFIVGVSLAF 111
Query: 109 SLKRIPDXXXXXXXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIAL 168
+ K++PD G++LQGG+ H +L+YGVD++ +R G+LQRIA+
Sbjct: 112 AYKKVPDKMLATKKAMLRAVKLFIVGLILQGGFFHGIHELTYGVDIRKIRLMGVLQRIAI 171
Query: 169 AYLVVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFR 228
AYLVVA+ EI + SG + Y Q V ++V YL ++YG++VPDW++
Sbjct: 172 AYLVVALCEIWLRRVSSGGNIGSGSMLITRYHHQMFVGLVLVVTYLVILYGLHVPDWEYE 231
Query: 229 VSDVKNPNFGKILTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSP 288
V+ + K V CG +G P CNAVG IDR VLGI H+Y P + + + C+ SP
Sbjct: 232 VTSPDSTV--KHFLVKCGVKGDTGPGCNAVGMIDRSVLGIQHLYAHPVYLKTEQCSMASP 289
Query: 289 HEGPFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXX 348
GP ++P+WC APF+PEGLLSSL A+++ +IG+ GHV+VH K H +R+K+WSI+
Sbjct: 290 RNGPLPPNAPSWCEAPFDPEGLLSSLMAIVTCLIGLQIGHVIVHFKKHNERIKRWSILSL 349
Query: 349 XXXXXXXXXHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWT 408
H + +NK LY+ SY CVT G AG+ F Y LVD+ P P++W
Sbjct: 350 CLLTLGFSLHL-FGLHMNKSLYSLSYTCVTTGTAGLFFVAIYLLVDVKGYKRPVLPMEWM 408
Query: 409 GMNAMLVYVMAAAGIFEGFLNGWYYEGTNNTLVYWV 444
G +A++++V+ A + + G+Y++ +N L+ +
Sbjct: 409 GKHALMIFVLVACNVIPVLVQGFYWKEPSNNLLKLI 444
>Os04g0404900 Conserved hypothetical protein
Length = 447
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/391 (43%), Positives = 242/391 (61%), Gaps = 6/391 (1%)
Query: 51 RRVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSL 110
+R+ SLDVFRG+TV LMILVD AG P I H+PW+G LADFVMPFFLFIVG+A+ L+
Sbjct: 56 QRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAY 115
Query: 111 KRIPDXXXXXXXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAY 170
KR+P+ G++LQGG+ H L++G+DM+ +R GILQRIA+AY
Sbjct: 116 KRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAY 175
Query: 171 LVVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVS 230
+V A+ EI K D SGF + + Q + +++ Y+ +YG YVPDW++R+S
Sbjct: 176 IVTALCEIWLKG---DDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRIS 232
Query: 231 DVKNPNFGKILTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHE 290
+ K V C RG P CNAVG IDRK+LGI H+Y RP + R K C+ +SP
Sbjct: 233 VPGSTE--KSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQN 290
Query: 291 GPFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXXXX 350
GP + D+P+WC APF+PEGLLSS+ A+++ +IG+ YGHV+VH + H +R+ +W I
Sbjct: 291 GPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSM 350
Query: 351 XXXXXXXHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGM 410
F + +NK LYT SY TAGAAG++F Y LVD+ P A ++W G
Sbjct: 351 LILAFSLDF-FGMHMNKPLYTVSYALATAGAAGLLFAGIYALVDMYGHRRPTAVMEWMGT 409
Query: 411 NAMLVYVMAAAGIFEGFLNGWYYEGTNNTLV 441
+A+++YV+ A I F++G+Y+ N L+
Sbjct: 410 HALMIYVLIACNILPIFIHGFYWREPKNNLL 440
>Os02g0526000 Conserved hypothetical protein
Length = 376
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 226/378 (59%), Gaps = 6/378 (1%)
Query: 67 MILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLKRIPDXXXXXXXXXXX 126
MI+VD AG P + H+PW+G +ADFVMPFFLF+VG+++ L+ KR+PD
Sbjct: 1 MIIVDDAGAFLPALNHSPWDGVTIADFVMPFFLFMVGISLTLAYKRVPDKLEATKKAVLR 60
Query: 127 XXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYLVVAVLEIVTKNAKVQ 186
G++LQGG+ H L++GVD+ +R GILQRIA+AYL+ A+ EI K
Sbjct: 61 ALKLFCLGLVLQGGFFHGVRSLTFGVDITKIRLMGILQRIAIAYLLAAICEIWLKG---D 117
Query: 187 DQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSDVKNPNFGKILTVTCG 246
D G + R Y Q +VA + +Y ++ G+YVPDW++++S + K +V CG
Sbjct: 118 DDVDCGLDVIRRYRYQLVVALLLSTMYTVILNGVYVPDWEYQISGPGSTE--KSFSVRCG 175
Query: 247 TRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEGPFKTDSPAWCYAPFE 306
RG P CNAVG +DR +LGI+H+Y RP + R K C+ + P GP D+P+WC APF+
Sbjct: 176 VRGDTGPACNAVGMLDRTILGIDHLYRRPVYARTKQCSINYPQNGPLPPDAPSWCQAPFD 235
Query: 307 PEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXXXXXXXXXXXHFSHAIPLN 366
PEGLLSS+ A+++ +IG+ +GH+++H + H R+ W I F I +N
Sbjct: 236 PEGLLSSVMAIVTCLIGLQFGHIIIHFEKHKGRIINWLIPSFSMLALAFSMDFI-GIRMN 294
Query: 367 KQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMNAMLVYVMAAAGIFEG 426
K LYT SY T+GAAG++F Y LVD+ P++W G +A+++YV+ A I
Sbjct: 295 KPLYTISYALATSGAAGLLFAGIYTLVDVYGFRKLTIPMEWMGKHALMIYVLVACNILPI 354
Query: 427 FLNGWYYEGTNNTLVYWV 444
F++G+Y+ N L+ ++
Sbjct: 355 FIHGFYWREPKNNLLKFI 372
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.143 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,792,612
Number of extensions: 665781
Number of successful extensions: 1681
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1662
Number of HSP's successfully gapped: 7
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)