BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0926200 Os01g0926200|AK073650
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragm... 479 e-136
Os11g0629300 Similar to RING-H2 finger protein RHB1a 149 2e-36
Os03g0598700 Zinc finger, RING-type domain containing protein 86 3e-17
Os11g0294600 Zinc finger, RING-type domain containing protein 81 6e-16
Os10g0142100 Zinc finger, RING-type domain containing protein 79 3e-15
>Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragment)
Length = 229
Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MGGFCCCLCTDDFEEYAHPNNPIYRQGVCLRNFFHNFFGGYTATFQRLESRPSNPAQGAA 60
MGGFCCCLCTDDFEEYAHPNNPIYRQGVCLRNFFHNFFGGYTATFQRLESRPSNPAQGAA
Sbjct: 1 MGGFCCCLCTDDFEEYAHPNNPIYRQGVCLRNFFHNFFGGYTATFQRLESRPSNPAQGAA 60
Query: 61 PLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRREKSINLTQEESLA 120
PLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRREKSINLTQEESLA
Sbjct: 61 PLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRREKSINLTQEESLA 120
Query: 121 LRRNGSSSGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVVTSEDEDVCP 180
LRRNGSSSGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVVTSEDEDVCP
Sbjct: 121 LRRNGSSSGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVVTSEDEDVCP 180
Query: 181 TCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCETP 229
TCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCETP
Sbjct: 181 TCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCETP 229
>Os11g0629300 Similar to RING-H2 finger protein RHB1a
Length = 220
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 125/230 (54%), Gaps = 13/230 (5%)
Query: 1 MGGFCCCLCTDDFEEYAHPNNPIYRQGVCLRNFFHNFFGGYTATFQRLESRPSNPAQGAA 60
MG C CL D + + H +P +CLR F YT F+ + + A
Sbjct: 1 MGALCSCLQADYSDHHGHHASPALGGCMCLRCFTQQLINAYTVLFRAGTVHAVSQSIEAT 60
Query: 61 PLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRREKSINLTQEESLA 120
P+ S+ S + TY RP PYD DPR++ QR+ LVSR S + + EES
Sbjct: 61 PVDSSESSFD--------TYRSPPRPLPYD-DPRFSPPQRDWLVSRHGPSCH-SPEESEP 110
Query: 121 LRRNGSSSGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVVT--SEDEDV 178
LR N +E ++ K S T + + K S + L K + F + +EDEDV
Sbjct: 111 LRANDDEE-METPSSTHKSSKTNYDTKMKRSSSTHGEKLPTKEPGNYFTYFSPSAEDEDV 169
Query: 179 CPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCET 228
CPTCLE+YT +NP+I+ +CSHH+HL CIYEWMERS+ CP+CGK+MEF ET
Sbjct: 170 CPTCLEDYTSENPRIVMQCSHHFHLGCIYEWMERSEACPVCGKKMEFDET 219
>Os03g0598700 Zinc finger, RING-type domain containing protein
Length = 213
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 28/233 (12%)
Query: 1 MGGFCCCLCTDDFEEYAHPNNPI--YRQGVCLRNFFHNF-FGGYTATFQRLESRPSNPAQ 57
MG CCL D P+ +R + N HN + R ++R + P Q
Sbjct: 1 MGSVLCCLADD--------GRPVCCFRLPWPIFNAAHNHNHNSGSIARPRADTRVA-PDQ 51
Query: 58 GAAPLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYAR-VQREGLVSRREK-SINLTQ 115
G L T PS + + +T+ RP P+D DPR++ + LV +K S +
Sbjct: 52 GRISL--TAPSQHDS----MDTFRCPPRPLPWD-DPRFSHHTEHHPLVGGHDKASTTFHK 104
Query: 116 EESLALRRNGSS-SGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVVTSE 174
SL +N S S + + ++ + +G H S+ + + + F
Sbjct: 105 SGSLGESKNADSISNSKAVKDDGPSTAVKDDGSSVKHHSDGLH-IGKEQVHDLFDF---- 159
Query: 175 DEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCE 227
ED CP CLEEY +NPK+ +C+H++HL CIYEWMERS CP+C K M F E
Sbjct: 160 -EDDCPICLEEYDYENPKMTLQCNHNFHLCCIYEWMERSQACPVCSKVMLFHE 211
>Os11g0294600 Zinc finger, RING-type domain containing protein
Length = 173
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 151 HRSESTKSLSAKSYNSSFAVVTSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWM 210
+ ES + KS A ++EDVCP CLEEY +NP+ + KC HH+HL CI EWM
Sbjct: 94 QQEESLEVDEFKSCEKCVAEDKPDEEDVCPICLEEYDAENPRSLTKCEHHFHLCCILEWM 153
Query: 211 ERSDTCPICGK 221
ERSDTCP+C +
Sbjct: 154 ERSDTCPVCDQ 164
>Os10g0142100 Zinc finger, RING-type domain containing protein
Length = 156
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 7/77 (9%)
Query: 149 KVHRSESTKSLSAKSYNSSFAVVTSED----EDVCPTCLEEYTPDNPKIIAKCSHHYHLS 204
K+H E +SL N S SED EDVCP CLEEY +NP+ + KC HH+HL
Sbjct: 74 KIH--EHKESLMMDD-NESLQKCVSEDKPDEEDVCPICLEEYDEENPRSMTKCEHHFHLC 130
Query: 205 CIYEWMERSDTCPICGK 221
CI EWMERS+TCP+C +
Sbjct: 131 CILEWMERSETCPVCDQ 147
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,152,774
Number of extensions: 386032
Number of successful extensions: 1626
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1640
Number of HSP's successfully gapped: 5
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)