BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0909600 Os01g0909600|AK072072
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0909600 Retrotransposon gag protein family protein 655 0.0
Os08g0441700 Peptidase aspartic, catalytic domain containin... 144 1e-34
Os10g0534000 83 3e-16
Os06g0583500 Integrase, catalytic region domain containing ... 78 1e-14
Os01g0528900 77 2e-14
Os03g0396600 74 2e-13
Os07g0474000 73 2e-13
Os05g0197700 72 7e-13
Os05g0209800 71 1e-12
Os03g0667200 70 1e-12
Os02g0776400 70 2e-12
Os01g0953300 70 2e-12
Os10g0330800 69 3e-12
Os02g0215300 69 3e-12
Os12g0108700 69 3e-12
Os01g0964550 69 4e-12
Os04g0644250 69 6e-12
Os12g0450216 69 6e-12
Os12g0212100 68 8e-12
>Os01g0909600 Retrotransposon gag protein family protein
Length = 331
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/331 (95%), Positives = 316/331 (95%)
Query: 1 MDPLKGVEESSLVTKGEMKSLLQDLIATGMMGPRIGGASPEIKLEQMPNEVKLEESQNYL 60
MDPLKGVEESSLVTKGEMKSLLQDLIATGMMGPRIGGASPEIKLEQMPNEVKLEESQNYL
Sbjct: 1 MDPLKGVEESSLVTKGEMKSLLQDLIATGMMGPRIGGASPEIKLEQMPNEVKLEESQNYL 60
Query: 61 SWSRRTRLMLRAKGVEHYLEETCIEPDDKLSVDWKVWNSTNSTVATWLMTSVAPSIARMV 120
SWSRRTRLMLRAKGVEHYLEETCIEPDDKLSVDWKVWNSTNSTVATWLMTSVAPSIARMV
Sbjct: 61 SWSRRTRLMLRAKGVEHYLEETCIEPDDKLSVDWKVWNSTNSTVATWLMTSVAPSIARMV 120
Query: 121 ETISNASTVWKTLSKMYSGEDNAMMMVEAQDKVENLKQEGRTVQEYASELQQLWADLDHY 180
ETISNASTVWKTLSKMYSGEDNAMMMVEAQDKVENLKQEGRTVQEYASELQQLWADLDHY
Sbjct: 121 ETISNASTVWKTLSKMYSGEDNAMMMVEAQDKVENLKQEGRTVQEYASELQQLWADLDHY 180
Query: 181 EXXXXXXXXXXXXXXXLWYINNEEVGLAAVAGNAEEIILLHCRLGHPSFDNVSKLYPILF 240
E LWYINNEEVGLAAVAGNAEEIILLHCRLGHPSFDNVSKLYPILF
Sbjct: 181 ERGTGRRIGTGVRRNGLWYINNEEVGLAAVAGNAEEIILLHCRLGHPSFDNVSKLYPILF 240
Query: 241 NGVNKSRLVCDACEFGKHTRTPYVGSGLRSYEPFILIHYDVWGPWPVTLVSGFKWFVSFI 300
NGVNKSRLVCDACEFGKHTRTPYVGSGLRSYEPFILIHYDVWGPWPVTLVSGFKWFVSFI
Sbjct: 241 NGVNKSRLVCDACEFGKHTRTPYVGSGLRSYEPFILIHYDVWGPWPVTLVSGFKWFVSFI 300
Query: 301 DCYTRMTWIYVLKHKNDVLRCFQDFHKFKSV 331
DCYTRMTWIYVLKHKNDVLRCFQDFHKFKSV
Sbjct: 301 DCYTRMTWIYVLKHKNDVLRCFQDFHKFKSV 331
>Os08g0441700 Peptidase aspartic, catalytic domain containing protein
Length = 309
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Query: 197 LWYINNEEVGLAAVAGNAE-EIILLHCRLGHPSFDNVSKLYPILFNGVNKSRLVCDACEF 255
LWYIN+EE+GLAAV GN E EI LLHC+LGHPSF+ +SKLY LF+ V+K RLVCDACE
Sbjct: 218 LWYINHEELGLAAVVGNVEKEISLLHCQLGHPSFEILSKLYLDLFSKVDKHRLVCDACEL 277
Query: 256 GKHTRTPYVGSGLRSYEPFILIHYDVWGPWPV 287
GKHTR+ YVG GLR+ EPFILIH DVWGP PV
Sbjct: 278 GKHTRSTYVGIGLRNCEPFILIHSDVWGPCPV 309
>Os10g0534000
Length = 875
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 197 LWYINNEEVGLAAVAGNAEEIILLHCRLGHPS---FDNVSKLYPILFNGVNKSRLVCDAC 253
L+ + +AA + A+ L H RLGHPS + KL + + ++ S +C AC
Sbjct: 337 LYTLPTAAPAIAAHSFLAQSSTLWHRRLGHPSSAAIQTLHKLAILPYTKIDHS--LCHAC 394
Query: 254 EFGKHTRTPYVGSGLRSYEPFILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLK 313
+ GKHTR P+ S + PF L+H DVW PV SGFK+++ +D ++ W + L+
Sbjct: 395 QLGKHTRLPFSRSQSSTSSPFELVHCDVWT-SPVLSTSGFKYYLVVLDDFSHFCWTFPLR 453
Query: 314 HKNDVLRCFQDF 325
HK+DV + +F
Sbjct: 454 HKSDVHQHIVEF 465
>Os06g0583500 Integrase, catalytic region domain containing protein
Length = 174
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 221 HCRLGHPSFDNVSKLY--PILFNGVNKSRLVCDACEFGKHTRTPYVGSGLRSYEPFILIH 278
H RLGH +S L +L + + C C+ GK + PY S R+ PF L+H
Sbjct: 71 HHRLGHLCGSRLSTLIRQGVLGHVSIDTTFDCTGCKLGKQIQLPYPISNSRTSCPFDLVH 130
Query: 279 YDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCF 322
DVWGP P G K++V FID Y+R TWIY +KH++ +L +
Sbjct: 131 SDVWGPAPFASKGGHKYYVIFIDDYSRYTWIYFMKHRSQLLSIY 174
>Os01g0528900
Length = 534
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 232 VSKLYPILFNGVN-KSRLVCDACEFGKHTRTPYVGSGLRSYEPFILIHYDVWGPWPVTLV 290
S+ P+L V+ + L C C+ GK + PY S S PF LIH DVWG P
Sbjct: 335 ASQSVPLLQRPVSGDTALHCTGCKLGKQLQLPYSSSDSESQRPFDLIHSDVWGQTPFVSK 394
Query: 291 SGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQDF 325
G ++V FID Y+R TWIY++ ++ L +Q F
Sbjct: 395 GGHSYYVIFIDDYSRFTWIYLMSSRSQFLSIYQQF 429
>Os03g0396600
Length = 750
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 207 LAAVAGNAEEII---LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRT 261
+ A A + +E I L H RLGH S +++L L +G + ++ C+ C FGKH R
Sbjct: 413 VTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRV 472
Query: 262 PYVGSGLRSYEPFILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRC 321
+ S R+ +H D+WGP + G ++ ++ ID Y+R W Y LKHK+D
Sbjct: 473 KFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAA 532
Query: 322 FQD 324
F++
Sbjct: 533 FKE 535
>Os07g0474000
Length = 614
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 213 NAEEIILLHCRLGHPSFDNV---SKLYPILFNGVNKSRLVCDACEFGKHTRTPYVGSGLR 269
+A + H RLGHP + +L I + + S +C AC+ GKHTR P+ S
Sbjct: 213 HATSTTIWHRRLGHPGSAAILALQRLSAIPSSKPDSS--LCHACQLGKHTRLPFTRSSSS 270
Query: 270 SYEPFILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQDF 325
+ PF L+H DVW PV SG+K+++ +D ++ W + L+HK+DV + DF
Sbjct: 271 TSSPFELVHCDVWT-SPVLSTSGYKFYLVILDDFSHFCWTFPLRHKSDVHQHIVDF 325
>Os05g0197700
Length = 1023
Score = 71.6 bits (174), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 213 NAEEIILLHCRLGHPSFDNVSKLYPILFNGVNKSRLVCDACEFGKHTRTPYVGSGLRSYE 272
N+ +L H RLGH D +++L ++ VC AC+ G+H R P+ S R+
Sbjct: 526 NSSTDLLWHRRLGHLGHDALNRLAAVVPMTRGDLTGVCHACQLGRHVRLPFASSTSRAST 585
Query: 273 PFILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQDFHKF 328
F L H D+W PV SGFK+++ +D + W + L+ K+D F +
Sbjct: 586 NFELFHCDLWTS-PVVSASGFKYYLVILDDCSHYVWTFPLRFKSDTFTTLSHFFAY 640
>Os05g0209800
Length = 731
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 221 HCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFILIH 278
H RLGH S +++L L +G + + C+ C FGKH R + S R+ +H
Sbjct: 385 HMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVH 444
Query: 279 YDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
D+WGP + G ++ ++ ID Y+R W Y LKHK+D F++
Sbjct: 445 ADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 490
>Os03g0667200
Length = 795
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 405 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 464
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G ++ ++ ID Y+R W Y LKHK+D F++
Sbjct: 465 VHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKE 512
>Os02g0776400
Length = 534
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 100 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 159
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G ++ ++ ID Y+R W Y LKHK+D F++
Sbjct: 160 VHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 207
>Os01g0953300
Length = 797
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 425 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 484
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G ++ ++ ID Y+R W Y LKHK+D F++
Sbjct: 485 VHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFATFKE 532
>Os10g0330800
Length = 754
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 425 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 484
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G + ++ ID Y+R W Y LKHK+D F++
Sbjct: 485 VHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 532
>Os02g0215300
Length = 653
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 339 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEYCVFGKHKRVKFNTSVHRTKGILDY 398
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G + ++ ID Y+R W Y LKHK+D F++
Sbjct: 399 VHADLWGPSRKPSLGGAHYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 446
>Os12g0108700
Length = 1028
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S RS
Sbjct: 389 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRSKGILDY 448
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G + ++ ID Y+R W Y LKHK+D F++
Sbjct: 449 VHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 496
>Os01g0964550
Length = 903
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H LGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 389 LWHMHLGHMSELGMTELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 448
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G ++ ++ ID Y+R W Y LKHK+D F++
Sbjct: 449 VHADLWGPSRKPSLGGARYMLTIIDDYSRRVWPYFLKHKDDTFAAFKE 496
>Os04g0644250
Length = 792
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 213 NAEEIILLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRS 270
N++ L H RLGH S +++L L +G + S+L C+ C FGKH R + S +
Sbjct: 429 NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTT 488
Query: 271 YEPFILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQDFHKFK 329
+H D+WGP T G ++ ++ +D Y+R W Y LKHK +Q F+ FK
Sbjct: 489 EGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHK------YQAFNVFK 541
>Os12g0450216
Length = 695
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 218 ILLHCRLGHPSFDNVSKLYPILFNGVNKSR---LVCDACEFGKHTRTPYVGSGLRSYEPF 274
+L H LGH D +++L + V SR VC AC+ G+HTR P+ S R+ F
Sbjct: 135 VLWHRHLGHLGHDALTRLTAV----VPMSRSDPTVCHACQLGRHTRLPFTTSFTRTTANF 190
Query: 275 ILIHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQDFHKF 328
LIH D+W PV VSG+K+++ +D + W + L+ K+D F +
Sbjct: 191 ELIHCDLWT-SPVVSVSGYKYYLVILDDCSHFVWTFPLRLKSDTFTTLSQFFAY 243
>Os12g0212100
Length = 680
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 219 LLHCRLGHPSFDNVSKLYPI-LFNGVNKSRL-VCDACEFGKHTRTPYVGSGLRSYEPFIL 276
L H RLGH S +++L L +G + + C+ C FGKH R + S R+
Sbjct: 402 LWHMRLGHMSELGMAELMKRNLLDGYTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDY 461
Query: 277 IHYDVWGPWPVTLVSGFKWFVSFIDCYTRMTWIYVLKHKNDVLRCFQD 324
+H D+WGP + G ++ ++ ID Y+ W Y LKHK+D F++
Sbjct: 462 VHADLWGPSRKPSLGGARYMLTIIDDYSTKVWPYFLKHKDDTFATFKE 509
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,850,862
Number of extensions: 422035
Number of successful extensions: 1596
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 19
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)