Os06g0583500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Integrase, catalytic region domain containing protein.
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Os06g0583500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Integrase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366.76 | 0.9 | 7.16 | 0.117 | 0.409 | -0.8 | -0.281 | -3.1 | 0.524 | 7.48 | 29.33 | 4732 | -- | -- |
| 375.16 | 0.902 | 7.14 | -0.157 | 0.48 | -0.859 | -0.303 | -- | 0.493 | 7.04 | 30 | 4803 | -- | -- |
| 366.93 | 0.892 | 7.16 | 0.111 | 0.412 | -0.798 | -- | -3.11 | 0.52 | 7.67 | 29.33 | 4734 | -- | -- |
| 375.49 | 0.903 | 7.14 | -0.144 | 0.468 | -0.847 | -- | -- | 0.489 | 7.1 | 30.24 | 4729 | -- | -- |
| 374.74 | 0.902 | 7.17 | 0.103 | -- | -0.839 | -- | -2.97 | 0.532 | -- | 29.77 | 4598 | -- | -- |
| 393.16 | 0.93 | 7.11 | -0.13 | 0.376 | -- | -0.239 | -- | 0.578 | 7.7 | -- | -- | -- | -- |
| 393.28 | 0.929 | 7.11 | -0.135 | 0.375 | -- | -- | -- | 0.579 | 7.98 | -- | -- | -- | -- |
| 383.11 | 0.912 | 7.15 | -0.145 | -- | -0.817 | -- | -- | 0.494 | -- | 30 | 4424 | -- | -- |
| 375.82 | 0.903 | 7.13 | -- | 0.431 | -0.844 | -- | -- | 0.492 | 7.43 | 30.6 | 4724 | -- | -- |
| 400.94 | 0.936 | 7.12 | -0.131 | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
| 393.76 | 0.928 | 7.11 | -- | 0.374 | -- | -- | -- | 0.594 | 8.01 | -- | -- | -- | -- |
| 383.74 | 0.912 | 7.15 | -- | -- | -0.816 | -- | -- | 0.495 | -- | 30 | 4424 | -- | -- |
| 401.39 | 0.935 | 7.12 | -- | -- | -- | -- | -- | 0.599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.14 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 5 | 354.79 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 9 | 355.08 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 20 | NA |
| 18 | 356.06 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 16 |
| 25 | 356.19 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 0 | NA |
| 29 | 356.36 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 30 | 356.37 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 48 | 357.26 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 49 | 357.30 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 55 | 357.79 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 75 | 359.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 78 | 359.31 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 89 | 359.59 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 102 | 360.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 107 | 360.44 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 114 | 360.61 | atmosphere | 995 | 43200 | < th | dose independent | sin | 2 | NA |
| 115 | 360.61 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 123 | 360.83 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 138 | 360.96 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 139 | 360.96 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 140 | 361.01 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 150 | 361.11 | atmosphere | 995 | 43200 | > th | dose independent | sin | 2 | NA |
| 157 | 361.32 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 166 | 361.41 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 176 | 361.61 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 178 | 361.64 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 204 | 361.87 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 225 | 362.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 228 | 362.09 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 233 | 362.14 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 253 | 362.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 270 | 362.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 17 |
| 280 | 362.49 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 290 | 362.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 299 | 362.70 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 301 | 362.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 336 | 363.06 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 357 | 363.27 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 389 | 363.45 | wind | 9 | 43200 | > th | dose independent | sin | 10 | NA |
| 398 | 363.48 | wind | 9 | 43200 | > th | dose dependent | sin | 11 | NA |
| 433 | 363.79 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 442 | 363.94 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 444 | 363.95 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 459 | 364.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 495 | 364.40 | wind | 9 | 43200 | < th | dose independent | sin | 10 | NA |
| 504 | 364.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 511 | 364.44 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 518 | 364.45 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 536 | 364.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 545 | 364.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 547 | 364.62 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 564 | 364.72 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 596 | 364.92 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 640 | 365.18 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 647 | 365.23 | radiation | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 678 | 365.42 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 735 | 365.78 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 742 | 365.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 745 | 365.85 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 755 | 365.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 767 | 366.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 785 | 366.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 802 | 366.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 862 | 366.34 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 1 |