Os12g0212100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0212100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.2 | 0.627 | 4.39 | 0.527 | 1.48 | -5.79 | 2.92 | 12.7 | -0.863 | 21.5 | 0.2386 | 820 | -- | -- |
| 196.36 | 0.653 | 4.28 | 0.587 | 1.46 | -2.91 | 2.52 | -- | -0.86 | 21.4 | 0.4677 | 438 | -- | -- |
| 205.81 | 0.668 | 4.35 | 0.533 | 1.42 | -5.88 | -- | 12.8 | -0.778 | 21.3 | 0.4645 | 553 | -- | -- |
| 221.87 | 0.694 | 4.28 | 0.636 | 1.43 | -2.92 | -- | -- | -0.893 | 21.5 | 0.5 | 443 | -- | -- |
| 319.47 | 0.832 | 4.36 | 0.288 | -- | -9.12 | -- | 20.3 | -0.877 | -- | 13.27 | 507 | -- | -- |
| 225.31 | 0.704 | 4.31 | 0.994 | 1.49 | -- | 3.24 | -- | -0.988 | 21.6 | -- | -- | -- | -- |
| 264.46 | 0.762 | 4.31 | 0.872 | 1.47 | -- | -- | -- | -0.994 | 21.7 | -- | -- | -- | -- |
| 329.52 | 0.845 | 4.26 | 0.618 | -- | -4.09 | -- | -- | -0.902 | -- | 2.981 | 423 | -- | -- |
| 230 | 0.706 | 4.3 | -- | 1.37 | -3.38 | -- | -- | -0.981 | 21.6 | 0.5 | 443 | -- | -- |
| 393.17 | 0.927 | 4.27 | 0.885 | -- | -- | -- | -- | -0.996 | -- | -- | -- | -- | -- |
| 284.49 | 0.789 | 4.34 | -- | 1.47 | -- | -- | -- | -1.09 | 21.7 | -- | -- | -- | -- |
| 336.81 | 0.855 | 4.27 | -- | -- | -4.19 | -- | -- | -0.975 | -- | 3.416 | 410 | -- | -- |
| 413.81 | 0.95 | 4.3 | -- | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.09 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 14 | 178.82 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 21 |
| 16 | 179.05 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 22 | 179.73 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 20 |
| 28 | 179.88 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 32 | 180.03 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 22 |
| 44 | 180.32 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 2 | NA |
| 56 | 180.86 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 67 | 181.03 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 73 | 181.21 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 5 | 23 |
| 86 | 181.47 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 90 | 181.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 105 | 181.73 | precipitation | 0.1 | 720 | > th | dose independent | no | NA | NA |
| 106 | 181.73 | precipitation | 0.1 | 720 | < th | dose independent | no | NA | NA |
| 107 | 181.73 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 109 | 181.73 | precipitation | 0.1 | 720 | < th | dose dependent | no | NA | NA |
| 112 | 181.77 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 123 | 181.91 | precipitation | 0.1 | 720 | > th | dose dependent | no | NA | NA |
| 126 | 181.92 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 170 | 182.68 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 177 | 182.85 | humidity | 90.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 178 | 182.86 | humidity | 80.0 | 720 | > th | dose independent | rect. | 16 | 6 |
| 182 | 182.94 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 15 |
| 191 | 183.03 | humidity | 80.0 | 720 | > th | dose independent | rect. | 10 | 12 |
| 273 | 184.18 | precipitation | 0.1 | 720 | > th | dose independent | sin | 12 | NA |
| 279 | 184.29 | precipitation | 0.1 | 720 | > th | dose independent | sin | 2 | NA |
| 357 | 185.08 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 365 | 185.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 366 | 185.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 368 | 185.15 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 369 | 185.15 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 371 | 185.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 373 | 185.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 396 | 185.30 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 11 | NA |
| 404 | 185.33 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 428 | 185.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 431 | 185.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 451 | 185.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 452 | 185.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 453 | 185.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 456 | 185.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 464 | 185.84 | humidity | 80.0 | 720 | > th | dose independent | sin | 19 | NA |
| 470 | 185.92 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 502 | 186.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 509 | 186.05 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 519 | 186.19 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 556 | 186.46 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 589 | 186.62 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 610 | 186.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 613 | 186.84 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 631 | 186.95 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 641 | 187.04 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 666 | 187.23 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 671 | 187.27 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 675 | 187.29 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 696 | 187.45 | humidity | 80.0 | 720 | < th | dose independent | sin | 19 | NA |
| 697 | 187.45 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 709 | 187.52 | humidity | 70.0 | 720 | > th | dose dependent | no | NA | NA |
| 751 | 187.80 | humidity | 90.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 819 | 188.23 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 829 | 188.31 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 850 | 188.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 854 | 188.42 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 855 | 188.42 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 908 | 188.64 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 916 | 188.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 920 | 188.69 | humidity | 80.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 938 | 188.78 | radiation | 1.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 998 | 188.92 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 23 |