BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0212100 Os12g0212100|Os12g0212100
         (680 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1  | chrM:89617-90054 REVERSE LENGTH=146                101   2e-21
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               93   6e-19

>ATMG00300.1 | chrM:89617-90054 REVERSE LENGTH=146
          Length = 145

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 374 NLYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGYTQGNMK 433
           +LY+L+GS   G    A  +KDE   T LWH RL HMS+ GM  L+K+  LD     ++K
Sbjct: 46  SLYILQGSVETGESNLAETAKDE---TRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLK 102

Query: 434 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKP 473
           FCE C++GK  RV F+T  H TK  LDYVH+DLWG    P
Sbjct: 103 FCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%)

Query: 544 MNRTIISKARCMLSNARMNKRFWAEAANTACYLINKSPSIPLNKKTPIEVWSGMPADYSQ 603
           MNRTII K R ML    + K F A+AANTA ++INK PS  +N   P EVW      YS 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 604 LRVFGCTAYAHVDNGKLEPRAIK 626
           LR FGC AY H D GKL+PRA K
Sbjct: 61  LRRFGCVAYIHCDEGKLKPRAKK 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,931,415
Number of extensions: 567523
Number of successful extensions: 1460
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 2
Length of query: 680
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 575
Effective length of database: 8,227,889
Effective search space: 4731036175
Effective search space used: 4731036175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)