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Os01g0909600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.99 (0.0396) R2 : 0.616
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.74 (0.0981) R2dC : 0.278 R2C : 0.391
β3 : 2.02 (0.133) R2dE : 0.221 R2E : 0.338
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0541 (0.0854) R2dN8 : 0.000237 R2N8 : 0.00471
σ : 0.739
deviance : 251.75
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C
peak time of C : 1.84
E
wheather : temperature
threshold : 18.95
memory length : 254
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 15.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.73 0.729 6.95 0.741 1.75 1.87 -0.778 2.02 0.171 2.04 18.84 256 19.1 15.7
246.45 0.731 6.98 0.627 1.72 1.98 -0.57 -- 0.151 1.87 18.65 255 19.2 15.6
242.86 0.726 6.95 0.75 1.77 1.87 -- 1.94 0.168 2.02 18.99 254 19.2 15.6
246.76 0.732 6.97 0.455 1.74 1.93 -- -- 0.0958 1.96 19.1 255 19.4 15.4
283.39 0.784 6.89 0.91 -- 3 -- 2.67 0.216 -- 14.49 327 18.1 15
324.65 0.845 6.89 0.777 2.3 -- -0.513 -- 0.417 3.3 -- -- -- --
325.48 0.845 6.89 0.787 2.3 -- -- -- 0.42 3.32 -- -- -- --
269 0.764 6.96 0.537 -- 3.13 -- -- 0.107 -- 11.16 341 17.9 14.9
251.75 0.739 6.99 -- 1.74 2.02 -- -- 0.0541 1.84 18.95 254 19.4 15.3
623.94 1.17 6.89 0.885 -- -- -- -- 0.481 -- -- -- -- --
341.81 0.865 6.91 -- 2.31 -- -- -- 0.332 3.32 -- -- -- --
273.88 0.771 6.98 -- -- 3.12 -- -- 0.0486 -- 11.75 339 17.8 14.9
644.58 1.19 6.91 -- -- -- -- -- 0.382 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.61 temperature 20.0 270 > th dose dependent rect. 19 16
3 244.81 wind 1.0 14400 < th dose dependent rect. 1 6
5 245.74 wind 1.0 14400 < th dose dependent rect. 1 3
9 247.03 wind 1.0 14400 < th dose dependent rect. 3 4
28 251.86 wind 1.0 43200 < th dose dependent rect. 5 2
29 251.92 wind 1.0 43200 > th dose independent rect. 5 2
35 253.36 wind 1.0 43200 < th dose dependent rect. 12 1
40 253.88 wind 1.0 14400 < th dose independent rect. 1 6
45 254.69 wind 1.0 14400 < th dose independent rect. 3 4
50 255.13 wind 1.0 14400 > th dose independent rect. 3 4
54 255.51 wind 1.0 14400 > th dose independent rect. 1 6
65 256.66 temperature 20.0 90 > th dose dependent sin 7 NA
90 258.15 humidity 80.0 14400 < th dose dependent rect. 6 1
103 259.02 temperature 20.0 270 > th dose dependent rect. 3 8
120 259.92 temperature 20.0 10 > th dose dependent rect. 21 15
122 259.97 wind 1.0 14400 < th dose independent rect. 5 2
126 260.15 wind 1.0 14400 < th dose dependent rect. 20 12
170 261.48 wind 1.0 43200 < th dose dependent sin 8 NA
173 261.57 precipitation 0.1 14400 > th dose independent rect. 15 1
174 261.57 precipitation 0.1 14400 > th dose dependent rect. 15 1
181 261.78 precipitation 0.1 14400 < th dose independent rect. 14 2
182 261.78 precipitation 0.1 14400 < th dose dependent rect. 14 2
221 262.56 temperature 20.0 4320 > th dose independent rect. 3 1
226 262.67 humidity 80.0 14400 > th dose independent rect. 6 1
228 262.70 temperature 20.0 4320 < th dose independent rect. 3 1
258 263.17 humidity 80.0 14400 < th dose independent rect. 6 1
263 263.21 temperature 20.0 4320 < th dose independent rect. 6 2
264 263.22 temperature 20.0 270 > th dose independent rect. 18 16
272 263.32 wind 3.0 43200 < th dose independent rect. 12 1
297 263.67 wind 1.0 43200 > th dose independent rect. 4 10
322 264.05 humidity 60.0 43200 < th dose independent rect. 9 1
334 264.22 temperature 20.0 4320 > th dose independent rect. 6 2
342 264.36 temperature 20.0 14400 < th dose dependent rect. 6 1
345 264.38 wind 1.0 43200 < th dose independent rect. 4 10
346 264.38 temperature 20.0 14400 < th dose dependent rect. 5 14
350 264.41 humidity 60.0 43200 > th dose independent rect. 20 14
361 264.56 humidity 60.0 43200 < th dose independent rect. 20 14
385 264.86 humidity 60.0 43200 > th dose independent rect. 9 1
421 265.25 temperature 20.0 4320 > th dose independent rect. 22 1
436 265.47 wind 1.0 43200 < th dose independent sin 9 NA
451 265.61 wind 9.0 14400 > th dose independent rect. 10 1
466 265.66 temperature 20.0 14400 < th dose dependent rect. 5 6
472 265.70 temperature 30.0 270 < th dose dependent rect. 23 16
481 265.79 temperature 30.0 90 < th dose dependent sin 6 NA
507 266.07 precipitation 0.1 14400 > th dose independent rect. 5 12
545 266.36 precipitation 0.1 14400 < th dose independent rect. 5 12
546 266.36 precipitation 0.1 14400 < th dose dependent rect. 5 12
548 266.38 temperature 20.0 14400 < th dose dependent sin 1 NA
558 266.51 temperature 20.0 4320 < th dose independent rect. 6 22
564 266.59 temperature 20.0 4320 > th dose independent rect. 2 21
567 266.61 temperature 20.0 4320 > th dose independent rect. 6 22
568 266.61 humidity 90.0 14400 < th dose dependent rect. 2 1
578 266.65 temperature 20.0 4320 < th dose independent rect. 2 21
579 266.67 wind 1.0 43200 > th dose independent sin 9 NA
601 266.86 temperature 20.0 4320 < th dose independent rect. 6 18
609 266.93 wind 1.0 43200 > th dose independent rect. 4 13
647 267.18 wind 9.0 43200 > th dose independent rect. 10 4
670 267.34 wind 9.0 14400 > th dose dependent rect. 12 1
674 267.38 temperature 20.0 4320 < th dose independent rect. 22 1
675 267.38 temperature 20.0 4320 > th dose independent rect. 20 16
682 267.44 precipitation 0.1 14400 > th dose dependent rect. 5 12
700 267.53 temperature 20.0 4320 < th dose independent rect. 19 17
719 267.62 temperature 20.0 4320 > th dose independent rect. 6 18
727 267.68 temperature 20.0 4320 > th dose independent rect. 20 8
827 268.03 temperature 20.0 4320 < th dose independent rect. 19 9
832 268.03 wind 1.0 14400 < th dose dependent rect. 1 14
839 268.06 temperature 20.0 4320 > th dose independent rect. 2 8
862 268.13 temperature 20.0 4320 < th dose independent rect. 2 8
873 268.17 temperature 20.0 4320 < th dose independent rect. 2 6
879 268.19 precipitation 0.1 14400 > th dose independent rect. 1 17
917 268.30 wind 1.0 43200 < th dose independent rect. 4 13
947 268.36 temperature 20.0 4320 > th dose independent rect. 2 6
966 268.40 temperature 25.0 270 < th dose independent rect. 22 15
971 268.41 temperature 20.0 4320 > th dose independent rect. 11 23
980 268.43 temperature 20.0 4320 > th dose independent no NA NA