BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0909600 Os01g0909600|AK072072
         (331 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1  | chr1:7447690-7448403 REVERSE LENGTH=238             57   2e-08

>AT1G21280.1 | chr1:7447690-7448403 REVERSE LENGTH=238
          Length = 237

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 2/127 (1%)

Query: 54  EESQNYLSWSRRTRLMLRAKGVEHYLEETCIEPDDKLSVDWKVWNSTNSTVATWLMTSVA 113
           ++  NY++W  R R  LR      +++ T  +PD   S  ++ W   N+ V  WLM S+ 
Sbjct: 37  KDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPD-PFSPLYQPWEQCNAMVMYWLMNSMT 95

Query: 114 PSIARMVETISNASTVWKTLSKMYSGEDNAMMMVEAQDKVENLKQEGRTVQEYASELQQL 173
             +   V     A  +W+ L +++    + + + + + ++  L+Q G +V+EY  +L ++
Sbjct: 96  DKLLESVMYAETAHKMWEDLRRVFVPCVD-LKIYQLRRRLATLRQGGDSVEEYFGKLSKV 154

Query: 174 WADLDHY 180
           W +L  Y
Sbjct: 155 WMELSEY 161



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,143,980
Number of extensions: 283787
Number of successful extensions: 863
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)