BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0874700 Os01g0874700|AK121856
(613 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0874700 emp24/gp25L/p24 family protein 646 0.0
Os05g0429400 Cellular retinaldehyde binding/alpha-tocophero... 602 e-172
Os06g0671800 Cellular retinaldehyde binding/alpha-tocophero... 324 1e-88
Os01g0926800 Phosphatidylinositol transfer protein-like, N-... 78 2e-14
Os05g0345100 emp24/gp25L/p24 family protein 71 3e-12
>Os01g0874700 emp24/gp25L/p24 family protein
Length = 613
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/343 (91%), Positives = 314/343 (91%)
Query: 271 LIWGVPLVGDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRFGIXXXXXXXXXXXX 330
LIWGVPLVGDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRFGI
Sbjct: 271 LIWGVPLVGDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRFGIESLLDADLALPE 330
Query: 331 XXXVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQL 390
VVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQL
Sbjct: 331 LDSVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQL 390
Query: 391 DFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAA 450
DFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAA
Sbjct: 391 DFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAA 450
Query: 451 NKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEFTTSDAVTE 510
NKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEFTTSDAVTE
Sbjct: 451 NKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEFTTSDAVTE 510
Query: 511 LTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 570
LTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE
Sbjct: 511 LTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 570
Query: 571 EPIMKGSFKVGEPGKIVLTINNPAXXXXXXXXXXXXXXTSESV 613
EPIMKGSFKVGEPGKIVLTINNPA TSESV
Sbjct: 571 EPIMKGSFKVGEPGKIVLTINNPASKKKKLLYRSKVKSTSESV 613
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 69 IEGTGSFKEESNLVADLPDPEKKALDEFKQLIAAALAACEFNL 111
IEGTGSFKEESNLVADLPDPEKKALDEFKQLIAAALAACEFNL
Sbjct: 69 IEGTGSFKEESNLVADLPDPEKKALDEFKQLIAAALAACEFNL 111
>Os05g0429400 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 585
Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/324 (88%), Positives = 298/324 (91%)
Query: 271 LIWGVPLVGDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRFGIXXXXXXXXXXXX 330
LIWGVPL GDDERTDTVLLKFLRAREFKVKEAMAML++AVLWRKRFGI
Sbjct: 242 LIWGVPLTGDDERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPE 301
Query: 331 XXXVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQL 390
VVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGIL QL
Sbjct: 302 LENVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQL 361
Query: 391 DFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAA 450
DFSPSGICSMVQVTDLKNSPPMLGKHR VTRQA+ALLQDNYPEFIAKK+FINVPWWY+AA
Sbjct: 362 DFSPSGICSMVQVTDLKNSPPMLGKHRTVTRQALALLQDNYPEFIAKKIFINVPWWYIAA 421
Query: 451 NKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEFTTSDAVTE 510
NKM+SPFLTQRTKSK IF + AKSAETLFRYIAPEQVPVQFGGL+KEDD EF+TSDAVTE
Sbjct: 422 NKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGLYKEDDTEFSTSDAVTE 481
Query: 511 LTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 570
L IKPSSKETVEIP TENST+ WELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE
Sbjct: 482 LPIKPSSKETVEIPATENSTVVWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 541
Query: 571 EPIMKGSFKVGEPGKIVLTINNPA 594
EPIMKGSFKVGEPGKIVLT++N A
Sbjct: 542 EPIMKGSFKVGEPGKIVLTVDNAA 565
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 69 IEGTGSFKEESNLVADLPDPEKKALDEFKQLIAAALAACEFNL 111
IEGTGSFKEESNLV++LPDPE+ AL + K+L+AAALAA EF+L
Sbjct: 66 IEGTGSFKEESNLVSELPDPERTALAQLKELVAAALAAGEFDL 108
>Os06g0671800 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 517
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/332 (49%), Positives = 219/332 (65%), Gaps = 14/332 (4%)
Query: 272 IWGVPLV---GDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRF-----GIXXXXX 323
+WGVPL+ GDD TD VLLKFLRAR+FK A MLR + WR+ + G
Sbjct: 167 LWGVPLLPSKGDDA-TDVVLLKFLRARDFKAGAAFDMLRKTLHWRREWKGFAAGTDDDDD 225
Query: 324 XXXXXXXXXXVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLE 383
+ GADREGHPVCYN G F D +Y+KA G EE + RFL+WR++ +E
Sbjct: 226 GEALPAELADACYLDGADREGHPVCYNALGVFADDAVYKKALGTEEGKARFLRWRVRAME 285
Query: 384 RGILSQLDFSPSGICSMVQVTDLKNSP-PMLGKHRAVTRQAVALLQDNYPEFIAKKVFIN 442
+ ++LD P G+ S++QVTDLKNSP P R +Q + L QDNYPE +A+ + IN
Sbjct: 286 SHV-AKLDLRPGGVASLLQVTDLKNSPGPAKKDLRVAMKQVLDLFQDNYPELVARNILIN 344
Query: 443 VPWWYLAANKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEF 502
VP+WY A + + PF+TQRTKSKF+ A P+K ETL +YI E +PV++GGL ++DD EF
Sbjct: 345 VPFWYYAFSTLFYPFMTQRTKSKFVIARPSKVTETLLKYIPIEAIPVKYGGLKRDDDTEF 404
Query: 503 TTSDA-VTELTIKPSSKETVEIPVTE-NSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIV 560
+ D+ VTEL +K SS ET+EI TE ++T+ W+L VLGWEV+Y EF P EG YTVIV
Sbjct: 405 SAEDSEVTELVVKASSTETIEIEATEGDTTLTWDLTVLGWEVNYKEEFVPSEEGSYTVIV 464
Query: 561 QKTRKVPANEEPIMKGSFKVGEPGKIVLTINN 592
+K +K+ ++E + + SF+ GEPGK+VLT+ N
Sbjct: 465 KKGKKMGSSEAAV-RNSFRAGEPGKVVLTVEN 495
>Os01g0926800 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 247
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 282 ERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKR-FGIXXXXXXXXXXXXXXXVVFYRGA 340
E + L +FLRAR+ V++A AML A+ WR+ V+ GA
Sbjct: 33 EVDNLTLRRFLRARDHNVEKASAMLLKALRWRREAVPGGSVPEEKVQSDLDDDKVYMGGA 92
Query: 341 DREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQLDFSPSGICSM 400
DR G P+ K F + +F + + LL+ I +++ P G
Sbjct: 93 DRTGRPILLA---------FPAKHFSAKRDMPKFKSYCVYLLD-SICARI---PRGQEKF 139
Query: 401 VQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAANKMMSPFLTQ 460
V + DLK RA A+ ++Q+ YPE + K + I+VP+ ++ A KM+ PF+
Sbjct: 140 VCIVDLKGWGYSNCDIRAYI-AAIEIMQNYYPERLGKALMIHVPYMFMKAWKMIYPFIDN 198
Query: 461 RTKSKFIFASPAKSAETLFRYIAPEQVPVQFGG 493
T+ KF+F E L + I Q+P GG
Sbjct: 199 VTRDKFVFVDDKSLQEVLHQEIDDSQIPDTLGG 231
>Os05g0345100 emp24/gp25L/p24 family protein
Length = 99
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 523 IPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGE 582
I +TI W+L V GWE+ YGAE+ P AE YT+ V++TRKVPA + + +F E
Sbjct: 10 ISFQAGATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPVHNAFTARE 69
Query: 583 PGKIVLTINN 592
GK+VL+I+N
Sbjct: 70 AGKMVLSIDN 79
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,010,417
Number of extensions: 443343
Number of successful extensions: 975
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 7
Length of query: 613
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 506
Effective length of database: 11,448,903
Effective search space: 5793144918
Effective search space used: 5793144918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)