BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0867100 Os01g0867100|AK066461
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0867100 Aminoacyl-tRNA synthetase, class Ib domain con... 334 2e-92
Os07g0675400 Aminoacyl-tRNA synthetase, class Ib domain con... 155 1e-38
Os08g0150800 Similar to Tyrosyl-tRNA synthetase (Tyrosyl-tR... 146 7e-36
Os08g0320000 Aminoacyl-tRNA synthetase, class Ib domain con... 145 1e-35
Os08g0191800 Aminoacyl-tRNA synthetase, class Ib domain con... 140 3e-34
Os04g0680600 109 9e-25
>Os01g0867100 Aminoacyl-tRNA synthetase, class Ib domain containing protein
Length = 162
Score = 334 bits (857), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MLFNILSTNLTIEVQTLAALYCLLADVCLRESLVFVIDSFTNESVQYTFSVLQVDISRKI 60
MLFNILSTNLTIEVQTLAALYCLLADVCLRESLVFVIDSFTNESVQYTFSVLQVDISRKI
Sbjct: 1 MLFNILSTNLTIEVQTLAALYCLLADVCLRESLVFVIDSFTNESVQYTFSVLQVDISRKI 60
Query: 61 KHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTADYVSGVLH 120
KHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTADYVSGVLH
Sbjct: 61 KHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTADYVSGVLH 120
Query: 121 PGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKYYKI 162
PGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKYYKI
Sbjct: 121 PGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKYYKI 162
>Os07g0675400 Aminoacyl-tRNA synthetase, class Ib domain containing protein
Length = 286
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 85/106 (80%)
Query: 55 DISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTADY 114
DI K++ AFCPPKLAEGNPCLEYIKYIILPW+G FEVV++K +GG KTFLSMEELTADY
Sbjct: 178 DICFKMEKAFCPPKLAEGNPCLEYIKYIILPWFGMFEVVQKKGNGGKKTFLSMEELTADY 237
Query: 115 VSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKYY 160
SG LHP D+KLAL SL +ILQPV DHF N EAK ++ I + Y
Sbjct: 238 ESGALHPADVKLALEKSLNEILQPVRDHFGRNGEAKDLVEAIGECY 283
>Os08g0150800 Similar to Tyrosyl-tRNA synthetase (Tyrosyl-tRNA ligase
Length = 394
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 83/107 (77%)
Query: 53 QVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTA 112
+ ++ KIK AFCPP + +GNPCLEYIKYI+ PW+ FEVVR++E+GGNKTF +M EL A
Sbjct: 274 EAQVNLKIKQAFCPPNIVDGNPCLEYIKYIVFPWFETFEVVRKEENGGNKTFANMNELIA 333
Query: 113 DYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKY 159
DY SG LHP D+K ALA ++ +ILQP+ DHFK+N+EAK L ++ Y
Sbjct: 334 DYESGALHPADVKPALAKAINQILQPIRDHFKNNSEAKVLLNTVKNY 380
>Os08g0320000 Aminoacyl-tRNA synthetase, class Ib domain containing protein
Length = 119
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 85/111 (76%)
Query: 49 FSVLQVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSME 108
++LQ ++ KIK AFCPP + +GNPCLEYIKYI+ PW+ FEVVR++ +GGNKTF +M+
Sbjct: 5 LNLLQAQVNLKIKQAFCPPNVVDGNPCLEYIKYIVFPWFEMFEVVRKEANGGNKTFTNMD 64
Query: 109 ELTADYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKY 159
EL DY +G LHP D+K ALA ++ +ILQP+ DHF +N+EAK L ++KY
Sbjct: 65 ELIDDYKTGALHPADVKPALAKAINQILQPIRDHFNNNSEAKILLNTVKKY 115
>Os08g0191800 Aminoacyl-tRNA synthetase, class Ib domain containing protein
Length = 363
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 85/110 (77%)
Query: 53 QVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTA 112
+ +I KIK AFCPPK+ +GNPC+EYIKYII PW+GKFEVVR+ ++GGNKTF+S+EEL
Sbjct: 251 KAEIDLKIKQAFCPPKIVKGNPCIEYIKYIIFPWFGKFEVVRKAKNGGNKTFMSVEELVM 310
Query: 113 DYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKYYKI 162
DY SG LHP D+K AL ++ +IL+PV +HF++N EAK ++ Y ++
Sbjct: 311 DYESGSLHPADVKPALKEAINQILKPVREHFENNKEAKFLRDTVKGYSEV 360
>Os04g0680600
Length = 390
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 71/99 (71%)
Query: 55 DISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTADY 114
DI KI AFCP ++ NPCLEYIK ++LPW+GKFEVV+++ +G NKT+ SM+EL ADY
Sbjct: 231 DIEEKISCAFCPSRVVACNPCLEYIKSVVLPWFGKFEVVQKEGNGSNKTYSSMKELIADY 290
Query: 115 VSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKAL 153
SG L D+KLAL ++ IL+ V + F+SN EA+ +
Sbjct: 291 ESGDLDSFDVKLALGKAINDILELVSEFFRSNEEAQAQI 329
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,009,463
Number of extensions: 190744
Number of successful extensions: 467
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 6
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)