Os07g0675400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.
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Os07g0675400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.12 | 0.226 | 10.1 | -1.49 | 0.549 | 1.33 | 0.471 | -1.35 | -0.274 | 13.6 | 9.366 | 1069 | -- | -- |
| 24.5 | 0.231 | 10.1 | -1.22 | 0.554 | 1.32 | 0.656 | -- | -0.203 | 13.4 | 8.637 | 1041 | -- | -- |
| 23.86 | 0.228 | 10.1 | -1.53 | 0.553 | 1.34 | -- | -1.68 | -0.285 | 13.4 | 13.98 | 1007 | -- | -- |
| 26.25 | 0.239 | 10.1 | -1.19 | 0.551 | 1.3 | -- | -- | -0.196 | 13.7 | 9.397 | 1067 | -- | -- |
| 29.01 | 0.251 | 10.1 | -1.18 | -- | 1.48 | -- | -0.469 | -0.2 | -- | -3.287 | 61 | -- | -- |
| 50.78 | 0.334 | 10 | -0.835 | 0.375 | -- | 0.584 | -- | 0.0205 | 14.2 | -- | -- | -- | -- |
| 51.99 | 0.338 | 10 | -0.818 | 0.38 | -- | -- | -- | 0.0243 | 14.5 | -- | -- | -- | -- |
| 29.17 | 0.252 | 10.1 | -1.11 | -- | 1.48 | -- | -- | -0.181 | -- | 4.185 | 48 | -- | -- |
| 59.07 | 0.358 | 10 | -- | 0.492 | 0.819 | -- | -- | 0.00728 | 13.5 | 4.718 | 911 | -- | -- |
| 60.49 | 0.363 | 10 | -0.834 | -- | -- | -- | -- | 0.0148 | -- | -- | -- | -- | -- |
| 69.64 | 0.39 | 10 | -- | 0.396 | -- | -- | -- | 0.115 | 14.6 | -- | -- | -- | -- |
| 59.57 | 0.359 | 10 | -- | -- | 0.924 | -- | -- | -0.0198 | -- | 18.7 | 4 | -- | -- |
| 78.86 | 0.414 | 10 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 119 | 23.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 126 | 23.67 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 131 | 23.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 153 | 23.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 166 | 23.73 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 176 | 23.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 183 | 23.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 205 | 23.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 228 | 23.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 290 | 23.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 302 | 23.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 315 | 23.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 317 | 23.88 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 565 | 24.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 607 | 24.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 823 | 24.38 | temperature | 30 | 1440 | < th | dose dependent | sin | 1 | NA |
| 879 | 24.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |