Os08g0150800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tyrosyl-tRNA synthetase (Tyrosyl-tRNA ligase; TyrRS). class-I aaRS.
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Os08g0150800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tyrosyl-tRNA synthetase (Tyrosyl-tRNA ligase; TyrRS). class-I aaRS.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.72 | 0.455 | 8.65 | -0.728 | 0.932 | 1.6 | 0.374 | -0.965 | -0.395 | 18.1 | 25.32 | 23 | -- | -- |
| 94.04 | 0.452 | 8.64 | -0.624 | 0.938 | 1.52 | 0.295 | -- | -0.368 | 18.1 | 25.3 | 22 | -- | -- |
| 94.02 | 0.452 | 8.65 | -0.726 | 0.935 | 1.61 | -- | -0.842 | -0.389 | 18.1 | 25.4 | 22 | -- | -- |
| 94.25 | 0.452 | 8.64 | -0.63 | 0.935 | 1.53 | -- | -- | -0.368 | 18.1 | 25.3 | 22 | -- | -- |
| 118.27 | 0.507 | 8.65 | -0.86 | -- | 2.09 | -- | -0.843 | -0.499 | -- | 24.33 | 174 | -- | -- |
| 127.45 | 0.529 | 8.62 | -0.4 | 1.4 | -- | 0.806 | -- | -0.266 | 16.9 | -- | -- | -- | -- |
| 129.12 | 0.532 | 8.62 | -0.398 | 1.4 | -- | -- | -- | -0.262 | 16.9 | -- | -- | -- | -- |
| 119.21 | 0.509 | 8.65 | -0.771 | -- | 2.04 | -- | -- | -0.491 | -- | 24.27 | 174 | -- | -- |
| 104.27 | 0.476 | 8.62 | -- | 0.998 | 1.38 | -- | -- | -0.282 | 17.9 | 25.45 | 22 | -- | -- |
| 232.42 | 0.712 | 8.6 | -0.45 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 133.3 | 0.54 | 8.61 | -- | 1.41 | -- | -- | -- | -0.217 | 16.9 | -- | -- | -- | -- |
| 134.51 | 0.54 | 8.63 | -- | -- | 1.93 | -- | -- | -0.402 | -- | 24.3 | 174 | -- | -- |
| 237.75 | 0.72 | 8.59 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 25 | 91.45 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 26 | 91.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 27 | 91.75 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 70 | 93.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 78 | 93.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 90 | 93.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 98 | 93.36 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 122 | 93.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 124 | 93.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 127 | 93.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 141 | 93.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 169 | 94.02 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 192 | 94.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 196 | 94.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 284 | 94.40 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 341 | 94.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 418 | 95.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 466 | 95.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 477 | 95.50 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 511 | 95.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 522 | 96.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 582 | 96.39 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 644 | 96.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 925 | 98.24 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 12 |