Os08g0320000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.
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Os08g0320000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.7 | 0.303 | 10.4 | -0.392 | 0.627 | 0.493 | 0.11 | -1.28 | -0.0903 | 17.9 | 20.6 | 2815 | -- | -- |
| 44 | 0.309 | 10.4 | -0.162 | 0.616 | 0.756 | 0.0555 | -- | -0.0268 | 17.7 | 19.63 | 2754 | -- | -- |
| 41.73 | 0.301 | 10.4 | -0.393 | 0.627 | 0.496 | -- | -1.28 | -0.0904 | 17.9 | 20.6 | 2815 | -- | -- |
| 44 | 0.309 | 10.4 | -0.172 | 0.629 | 0.768 | -- | -- | -0.0257 | 17.8 | 19.66 | 2760 | -- | -- |
| 61.55 | 0.365 | 10.4 | -0.394 | -- | 0.512 | -- | -1.15 | -0.0856 | -- | 20.5 | 3434 | -- | -- |
| 54.47 | 0.346 | 10.3 | 0.227 | 0.603 | -- | 0.308 | -- | 0.151 | 18.1 | -- | -- | -- | -- |
| 54.7 | 0.346 | 10.3 | 0.225 | 0.604 | -- | -- | -- | 0.152 | 18 | -- | -- | -- | -- |
| 63.26 | 0.37 | 10.4 | -0.264 | -- | 0.854 | -- | -- | -0.0602 | -- | 19.36 | 3445 | -- | -- |
| 44.57 | 0.311 | 10.4 | -- | 0.621 | 0.673 | -- | -- | 0.00792 | 17.9 | 19.7 | 2749 | -- | -- |
| 73.63 | 0.401 | 10.3 | 0.207 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 56.03 | 0.35 | 10.3 | -- | 0.601 | -- | -- | -- | 0.127 | 18 | -- | -- | -- | -- |
| 63.67 | 0.372 | 10.4 | -- | -- | 0.67 | -- | -- | 0.00686 | -- | 19.62 | 2018 | -- | -- |
| 74.76 | 0.404 | 10.3 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 2 | 40.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 5 | 40.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 32 | 40.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 43 | 40.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 46 | 40.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 61 | 40.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 74 | 40.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 96 | 41.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 97 | 41.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 110 | 41.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 135 | 41.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 208 | 41.61 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 221 | 41.68 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 239 | 41.74 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 266 | 41.83 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 286 | 41.89 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 295 | 41.91 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 355 | 42.10 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 448 | 42.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 488 | 42.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 518 | 42.51 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 526 | 42.52 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 559 | 42.57 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 576 | 42.62 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 581 | 42.63 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 589 | 42.63 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 644 | 42.72 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 655 | 42.74 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 675 | 42.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 683 | 42.77 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 687 | 42.77 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 690 | 42.78 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 695 | 42.79 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 712 | 42.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 736 | 42.83 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 741 | 42.83 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 752 | 42.85 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 802 | 42.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 804 | 42.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 819 | 42.93 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 828 | 42.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 861 | 42.98 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 868 | 42.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 885 | 43.01 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 935 | 43.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 941 | 43.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 958 | 43.14 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 982 | 43.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |