BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0320000 Os08g0320000|AK101379
         (119 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28350.1  | chr1:9944483-9949577 FORWARD LENGTH=749            152   5e-38
AT2G33840.1  | chr2:14315011-14317329 FORWARD LENGTH=386          147   1e-36

>AT1G28350.1 | chr1:9944483-9949577 FORWARD LENGTH=749
          Length = 748

 Score =  152 bits (383), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 88/110 (80%)

Query: 9   QAQVNLKIKQAFCPPNVVDGNPCLEYIKYIVFPWFEMFEVVRKEANGGNKTFTNMDELID 68
           +A+VN+KIK+A+CPP++V+GNPCLEY+K+I+ PWF  F V R E  GGN+TF + +++  
Sbjct: 261 EAEVNVKIKKAYCPPDIVEGNPCLEYVKHIILPWFSEFTVERDEKYGGNRTFKSFEDITT 320

Query: 69  DYKTGALHPADVKPALAKAINQILQPIRDHFNNNSEAKILLNTVKKYRVT 118
           DY++G LHP D+K AL+KA+N+ILQP+RDHF  NS AK LL  VK Y+VT
Sbjct: 321 DYESGQLHPKDLKDALSKALNKILQPVRDHFKTNSRAKNLLKQVKGYKVT 370




 Score =  138 bits (347), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 9   QAQVNLKIKQAFCPPNVVDGNPCLEYIKYIVFPWFEMFEVVRKEANGGNKTFTNMDELID 68
           +A VN KI +A+CPP  V+GNPCLEY+KYIV P F  F+V   E NGGNKTF + ++++ 
Sbjct: 639 EADVNEKISKAYCPPKTVEGNPCLEYVKYIVLPRFNEFKV-ESEKNGGNKTFNSFEDIVA 697

Query: 69  DYKTGALHPADVKPALAKAINQILQPIRDHFNNNSEAKILLNTVKKYRVT 118
           DY+TG LHP D+K AL KA+N  LQP+RDHF  N  AK LL  VK +RVT
Sbjct: 698 DYETGELHPEDLKKALMKALNITLQPVRDHFKTNERAKNLLEQVKAFRVT 747



>AT2G33840.1 | chr2:14315011-14317329 FORWARD LENGTH=386
          Length = 385

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 84/111 (75%)

Query: 9   QAQVNLKIKQAFCPPNVVDGNPCLEYIKYIVFPWFEMFEVVRKEANGGNKTFTNMDELID 68
           +A+VN+KIK+A+CPP VV GNPCLEYIKYI+ PWF+ F V R E  GGNKT+ + +++  
Sbjct: 275 EAEVNVKIKKAYCPPKVVKGNPCLEYIKYIILPWFDEFTVERNEEYGGNKTYKSFEDIAA 334

Query: 69  DYKTGALHPADVKPALAKAINQILQPIRDHFNNNSEAKILLNTVKKYRVTN 119
           DY++G LHP D+K  L  A+N+ILQP+RDHF  ++ AK LL  +K YRVT 
Sbjct: 335 DYESGELHPGDLKKGLMNALNKILQPVRDHFKTDARAKNLLKQIKAYRVTR 385



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,672,253
Number of extensions: 101555
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)