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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0191800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0274) R2 : 0.00149
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0476 (0.0576) R2dN8 : 0.00193 R2N8 : 0.00149
σ : 0.515
deviance : 121.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.9 0.495 3.29 -0.148 0.0429 -0.372 0.961 1.38 -0.00385 15.6 19.97 316 -- --
113.59 0.496 3.3 -0.15 0.0353 -0.368 0.255 -- -0.0107 15.8 19.73 300 -- --
113.07 0.495 3.28 -0.101 0.112 -0.358 -- 1.06 0.026 16.3 19.99 342 -- --
113.4 0.496 3.28 -0.142 0.0407 -0.379 -- -- -0.00486 17.1 19.95 300 -- --
112.63 0.494 3.28 -0.106 -- -0.378 -- 0.655 0.0197 -- 19.53 321 -- --
116.59 0.506 3.28 -0.117 0.295 -- 0.0811 -- 0.0408 15.7 -- -- -- --
116.61 0.506 3.28 -0.115 0.295 -- -- -- 0.0413 15.6 -- -- -- --
113.48 0.496 3.28 -0.129 -- -0.418 -- -- 0.0102 -- 19.88 300 -- --
113.78 0.497 3.29 -- 0.0694 -0.375 -- -- 0.00947 18.3 19.95 300 -- --
121.45 0.515 3.28 -0.128 -- -- -- -- 0.0334 -- -- -- -- --
116.96 0.506 3.28 -- 0.297 -- -- -- 0.0541 15.6 -- -- -- --
113.91 0.497 3.28 -- -- -0.415 -- -- 0.0213 -- 19.96 300 -- --
121.87 0.515 3.28 -- -- -- -- -- 0.0476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.56 atmosphere 1005.0 10 > th dose independent rect. 2 1
2 96.85 temperature 20.0 10 > th dose independent rect. 2 1
3 97.00 atmosphere 1000.0 10 > th dose dependent rect. 2 1
4 97.16 wind 3.0 10 < th dose independent rect. 2 1
9 97.58 wind 1.0 30 > th dose independent rect. 2 1
10 97.61 humidity 80.0 10 > th dose independent rect. 2 1
16 97.69 temperature 30.0 30 < th dose dependent rect. 2 1
17 97.72 temperature 25.0 30 < th dose independent rect. 2 1
23 97.76 temperature 10.0 10 > th dose dependent rect. 2 1
25 97.80 temperature 10.0 30 > th dose independent rect. 2 1
29 97.80 humidity 50.0 30 > th dose independent rect. 2 1
33 97.80 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 97.80 radiation 1.0 30 < th dose independent rect. 2 1
40 97.80 precipitation 0.1 30 < th dose independent rect. 2 1
41 97.80 temperature 10.0 30 > th dose independent rect. 3 23
42 97.80 radiation 1.0 30 < th dose dependent rect. 2 1
47 97.80 precipitation 0.1 30 < th dose dependent rect. 2 1
50 97.89 humidity 50.0 30 > th dose dependent rect. 2 1
51 97.92 wind 9.0 30 < th dose dependent rect. 2 1
84 98.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
101 99.84 atmosphere 995.0 10 > th dose independent rect. 3 23
105 100.12 radiation 1.0 4320 < th dose dependent rect. 3 1
114 100.25 wind 9.0 1440 < th dose independent rect. 3 1
115 100.25 temperature 10.0 1440 > th dose independent rect. 3 1
118 100.25 temperature 30.0 1440 < th dose independent rect. 3 1
122 100.25 humidity 50.0 1440 > th dose independent rect. 3 1
131 100.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
132 100.25 radiation 1.0 1440 < th dose independent rect. 3 1
152 100.25 temperature 10.0 1440 > th dose independent rect. 4 23
179 101.87 precipitation 0.1 10 < th dose independent rect. 3 23
180 101.87 precipitation 0.1 10 < th dose dependent rect. 3 23
184 102.08 wind 9.0 30 < th dose independent rect. 3 23
187 102.56 humidity 50.0 30 > th dose independent rect. 3 23
194 103.23 humidity 90.0 90 < th dose independent rect. 1 2
223 105.67 wind 7.0 90 < th dose independent rect. 13 14
225 105.69 temperature 30.0 30 < th dose independent rect. 3 23
264 106.17 humidity 50.0 90 > th dose independent rect. 3 10
272 106.39 temperature 10.0 90 > th dose independent rect. 3 10
273 106.39 atmosphere 995.0 90 > th dose independent rect. 3 10
274 106.39 atmosphere 1015.0 90 < th dose independent rect. 3 10
275 106.39 temperature 10.0 90 > th dose independent rect. 13 14
276 106.40 wind 9.0 90 < th dose independent rect. 3 10
278 106.47 precipitation 0.1 90 < th dose independent rect. 3 10
279 106.47 precipitation 0.1 90 < th dose dependent rect. 3 10
282 106.51 precipitation 0.1 90 < th dose independent rect. 13 14
283 106.51 precipitation 0.1 90 < th dose dependent rect. 13 14
286 106.60 radiation 10.0 90 < th dose dependent rect. 3 22
294 106.81 wind 9.0 90 < th dose dependent rect. 13 14
298 106.99 radiation 20.0 270 < th dose independent rect. 3 19
301 107.01 atmosphere 995.0 90 > th dose independent rect. 13 14
311 107.21 humidity 90.0 270 < th dose independent rect. 23 3
320 107.32 humidity 50.0 90 > th dose dependent rect. 3 22
330 107.50 radiation 20.0 270 < th dose dependent rect. 3 19
335 107.54 temperature 10.0 270 > th dose dependent rect. 22 5
337 107.58 temperature 25.0 270 > th dose dependent rect. 23 4
351 107.76 atmosphere 1015.0 90 < th dose independent rect. 13 14
354 107.77 wind 1.0 30 < th dose independent rect. 23 4
371 107.90 humidity 60.0 270 > th dose independent rect. 3 19
379 108.02 radiation 1.0 90 < th dose independent rect. 3 22
388 108.08 radiation 40.0 270 < th dose independent rect. 3 19
393 108.12 temperature 30.0 90 < th dose independent rect. 3 10
410 108.19 atmosphere 1005.0 270 > th dose independent rect. 22 5
414 108.24 humidity 60.0 270 > th dose independent rect. 15 7
415 108.25 radiation 40.0 90 < th dose independent rect. 13 14
462 108.33 radiation 30.0 270 < th dose independent rect. 15 7
513 108.46 wind 9.0 270 < th dose independent rect. 22 17
520 108.50 humidity 60.0 270 > th dose independent rect. 14 21
599 108.57 wind 5.0 270 < th dose independent rect. 22 5
625 108.65 atmosphere 1015.0 270 < th dose independent rect. 22 17
627 108.66 wind 1.0 270 > th dose independent rect. 22 5
628 108.66 wind 3.0 10 < th dose dependent rect. 22 5
640 108.70 atmosphere 995.0 270 > th dose independent rect. 15 7
652 108.73 temperature 30.0 270 < th dose independent rect. 15 7
676 108.77 atmosphere 995.0 270 > th dose independent rect. 22 17
687 108.78 temperature 10.0 270 > th dose independent rect. 15 7
688 108.78 temperature 10.0 270 > th dose independent rect. 22 17
696 108.80 humidity 50.0 270 > th dose independent rect. 22 17
721 108.82 radiation 40.0 270 < th dose dependent rect. 16 17
735 108.86 wind 1.0 10 > th dose independent rect. 16 21
739 108.87 precipitation 0.1 270 < th dose independent rect. 22 17
741 108.87 precipitation 0.1 270 < th dose dependent rect. 22 17
750 108.89 temperature 10.0 1440 > th dose independent rect. 4 10
753 108.89 atmosphere 995.0 1440 > th dose independent rect. 4 10
754 108.89 temperature 10.0 1440 > th dose independent rect. 14 14
762 108.90 atmosphere 995.0 270 > th dose independent rect. 3 19
765 108.91 wind 1.0 270 > th dose independent rect. 15 7
790 108.96 precipitation 0.1 270 < th dose independent rect. 22 5
792 108.96 precipitation 0.1 270 < th dose dependent rect. 22 5
793 108.97 temperature 10.0 270 > th dose independent rect. 22 5
794 108.97 temperature 30.0 270 < th dose independent rect. 22 5
795 108.97 humidity 50.0 270 > th dose independent rect. 22 5
798 108.97 atmosphere 995.0 270 > th dose independent rect. 22 5
799 108.97 radiation 1.0 270 < th dose independent rect. 22 5
806 108.97 temperature 10.0 270 > th dose independent rect. 3 19
810 108.97 radiation 1.0 270 < th dose dependent rect. 22 5
815 108.98 precipitation 0.1 270 < th dose independent rect. 15 7
819 108.98 precipitation 0.1 270 < th dose dependent rect. 15 7
823 109.00 atmosphere 1015.0 270 < th dose independent rect. 22 5
828 109.01 humidity 60.0 270 > th dose independent rect. 16 17
831 109.01 radiation 40.0 270 < th dose dependent rect. 14 8
842 109.04 precipitation 0.1 270 < th dose independent rect. 3 19
844 109.04 precipitation 0.1 270 < th dose dependent rect. 3 19
852 109.07 radiation 10.0 270 < th dose independent rect. 10 11
857 109.08 radiation 20.0 270 < th dose independent rect. 16 17
884 109.15 temperature 30.0 270 < th dose independent rect. 16 5
885 109.15 temperature 30.0 270 < th dose independent rect. 16 17
908 109.21 wind 9.0 270 < th dose independent rect. 15 7
917 109.23 radiation 10.0 270 > th dose independent rect. 11 3
921 109.24 humidity 90.0 270 < th dose dependent rect. 23 2
925 109.26 wind 1.0 270 > th dose independent rect. 11 15
939 109.28 radiation 1.0 270 > th dose dependent rect. 11 3
978 109.37 radiation 10.0 270 < th dose independent sin 23 NA