BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0191800 Os08g0191800|Os08g0191800
(363 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33840.1 | chr2:14315011-14317329 FORWARD LENGTH=386 398 e-111
AT1G28350.1 | chr1:9944483-9949577 FORWARD LENGTH=749 383 e-107
>AT2G33840.1 | chr2:14315011-14317329 FORWARD LENGTH=386
Length = 385
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/343 (57%), Positives = 247/343 (72%), Gaps = 15/343 (4%)
Query: 27 RVATLLGIAEECDTEEELRLLLRGNPHPVCYDSFLPCDRMTIAQGVLKAIHVRKMVEAGC 86
R + I EEC EEEL+ LL P+CYD F P RM IAQGV+K I+V KM AGC
Sbjct: 42 RYKIVRSIGEECIQEEELKNLLAKKAAPICYDGFEPSGRMHIAQGVMKVINVNKMTSAGC 101
Query: 87 RVKIWIDDWSAFLNNKLGGDMEKIQTVGRYMIEVWKSIGMNHDGVEFLCSSAEINSRADE 146
RVKIWI DW A LNNK+GGD++KI+ VG Y E+WK+ GM++D VEFL SS EINS+AD+
Sbjct: 102 RVKIWIADWFAQLNNKMGGDLKKIRVVGEYFQEIWKAAGMDNDKVEFLWSSEEINSKADK 161
Query: 147 YWPRVMGISTHRKIGVVRELRECKK----------PTAQFFNPCMQCAGIFFLEADICQM 196
YWP VM I+ RK + R LR C + AQ PCMQCA IFFLEADICQ+
Sbjct: 162 YWPLVMDIA--RKNKLPRILR-CVQIMGRSETDELSAAQILYPCMQCADIFFLEADICQL 218
Query: 197 GMDQHEVNKLATTYSDN-RQEKKPIILSHYLLPGLK-GQNKMSASDPASAIFMDDEKAEI 254
GMDQ +VN LA Y D+ +++ KPIILSH++LPGL+ GQ KMS SDP SAIFM+DE+AE+
Sbjct: 219 GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPLSAIFMEDEEAEV 278
Query: 255 DLKIKQAFCPPKIVKGNPCIEYIKYIIFPWFGKFEVVRKAKNGGNKTFMSVEELVMDYES 314
++KIK+A+CPPK+VKGNPC+EYIKYII PWF +F V R + GGNKT+ S E++ DYES
Sbjct: 279 NVKIKKAYCPPKVVKGNPCLEYIKYIILPWFDEFTVERNEEYGGNKTYKSFEDIAADYES 338
Query: 315 GSLHPADVKPALKEAINQILKPVREHFENNKEAKFLRDTVKGY 357
G LHP D+K L A+N+IL+PVR+HF+ + AK L +K Y
Sbjct: 339 GELHPGDLKKGLMNALNKILQPVRDHFKTDARAKNLLKQIKAY 381
>AT1G28350.1 | chr1:9944483-9949577 FORWARD LENGTH=749
Length = 748
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/340 (54%), Positives = 243/340 (71%), Gaps = 9/340 (2%)
Query: 27 RVATLLGIAEECDTEEELRLLLRGNPHPVCYDSFLPCDRMTIAQGVLKAIHVRKMVEAGC 86
R + + E+C ++EL+ LL PVCYD F P RM IAQG++K ++V K+ AGC
Sbjct: 28 RYNVVRSVGEQCIHDDELKDLLAKKAAPVCYDGFEPSGRMHIAQGLMKIMNVNKLTSAGC 87
Query: 87 RVKIWIDDWSAFLNNKLGGDMEKIQTVGRYMIEVWKSIGMNHDGVEFLCSSAEINSRADE 146
RVKIWI DW A++NNKLGGD++KI+ VG Y E++++ GMN + VEFL SS EIN++ DE
Sbjct: 88 RVKIWIADWFAYMNNKLGGDLKKIRVVGEYFKEIFQAAGMNSENVEFLWSSDEINAKGDE 147
Query: 147 YWPRVMGISTHRKIGVVRE------LRECKK-PTAQFFNPCMQCAGIFFLEADICQMGMD 199
YWP VM I+ + ++ L E ++ A CMQCA FFLEADICQ+GMD
Sbjct: 148 YWPLVMDIACRNSLAQIKRCMPIMGLSENEELSAAHILYVCMQCADTFFLEADICQLGMD 207
Query: 200 QHEVNKLATTYSDN-RQEKKPIILSHYLLPGLK-GQNKMSASDPASAIFMDDEKAEIDLK 257
Q VN LA Y D ++E KP+ILSH++LPGL+ GQ KMS SDP+SAIFM+DE+AE+++K
Sbjct: 208 QQTVNLLARDYCDVVKRENKPVILSHHMLPGLQQGQKKMSKSDPSSAIFMEDEEAEVNVK 267
Query: 258 IKQAFCPPKIVKGNPCIEYIKYIIFPWFGKFEVVRKAKNGGNKTFMSVEELVMDYESGSL 317
IK+A+CPP IV+GNPC+EY+K+II PWF +F V R K GGN+TF S E++ DYESG L
Sbjct: 268 IKKAYCPPDIVEGNPCLEYVKHIILPWFSEFTVERDEKYGGNRTFKSFEDITTDYESGQL 327
Query: 318 HPADVKPALKEAINQILKPVREHFENNKEAKFLRDTVKGY 357
HP D+K AL +A+N+IL+PVR+HF+ N AK L VKGY
Sbjct: 328 HPKDLKDALSKALNKILQPVRDHFKTNSRAKNLLKQVKGY 367
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/334 (54%), Positives = 239/334 (71%), Gaps = 10/334 (2%)
Query: 33 GIAEECDTEEELRLLLRGNPHPVCYDSFLPCDRMTIAQGVLKAIHVRKMVEAGCRVKIWI 92
I EEC E+EL+ LL P P+CYD F P RM IAQGV+K +V K+ AGC+VKIWI
Sbjct: 412 SIGEECIQEDELKNLLAKKPAPICYDGFEPSGRMHIAQGVMKVTNVNKLTSAGCQVKIWI 471
Query: 93 DDWSAFLNNKLGGDMEKIQTVGRYMIEVWKSIGMNHDGVEFLCSSAEINSRADEYWPRVM 152
DW A LNNKLGGD+E+I+ VG Y E+W++ GMN+D VEFL +S EIN + +YWP VM
Sbjct: 472 ADWFAQLNNKLGGDLERIRVVGEYFKEIWQAGGMNNDKVEFLWASDEINGKGSKYWPLVM 531
Query: 153 GISTHRKI------GVVRELRECKK-PTAQFFNPCMQCAGIFFLEADICQMGMDQHEVNK 205
I+ + G + E + AQ PCMQCA IF LEADICQ+GMDQ +VN
Sbjct: 532 DIARRNNLRRILRCGQIMGRSETEVLSAAQILYPCMQCADIFLLEADICQLGMDQRKVNM 591
Query: 206 LATTY-SDNRQEKKPIILSHYLLPGL-KGQNKMSASDPASAIFMDDEKAEIDLKIKQAFC 263
LA Y +D +++ KPIILSH++LPGL +GQ KMS SDP+SAIFM+DE+A+++ KI +A+C
Sbjct: 592 LAREYCADIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIFMEDEEADVNEKISKAYC 651
Query: 264 PPKIVKGNPCIEYIKYIIFPWFGKFEVVRKAKNGGNKTFMSVEELVMDYESGSLHPADVK 323
PPK V+GNPC+EY+KYI+ P F +F+ V KNGGNKTF S E++V DYE+G LHP D+K
Sbjct: 652 PPKTVEGNPCLEYVKYIVLPRFNEFK-VESEKNGGNKTFNSFEDIVADYETGELHPEDLK 710
Query: 324 PALKEAINQILKPVREHFENNKEAKFLRDTVKGY 357
AL +A+N L+PVR+HF+ N+ AK L + VK +
Sbjct: 711 KALMKALNITLQPVRDHFKTNERAKNLLEQVKAF 744
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,942,263
Number of extensions: 330285
Number of successful extensions: 693
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)