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Os01g0867100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminoacyl-tRNA synthetase, class Ib domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.72 (0.0166) R2 : 0.402
β1 : -1.06 (0.0609) R2dD : 0.413 R2D : 0.397
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0588 (0.0355) R2dN8 : 0.00481 R2N8 : -0.0112
σ : 0.312
deviance : 44.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.04 0.29 9.74 -1.14 0.00539 0.248 0.421 1.53 -0.0921 5.15 30 255 -- --
38.28 0.288 9.72 -1.01 0.0017 0.406 0.499 -- -0.0804 5.11 29.91 254 -- --
38.43 0.289 9.74 -1.17 0.002 0.232 -- 1.89 -0.0965 4.51 29.9 253 -- --
38.88 0.29 9.72 -1 0.00566 0.442 -- -- -0.0856 3.83 29.9 299 -- --
38.43 0.289 9.74 -1.19 -- 0.228 -- 1.89 -0.0968 -- 29.8 253 -- --
42.12 0.304 9.71 -1.07 0.14 -- 0.757 -- -0.0588 5.02 -- -- -- --
43.55 0.309 9.72 -1.07 0.145 -- -- -- -0.0626 4.42 -- -- -- --
38.88 0.29 9.72 -1 -- 0.445 -- -- -0.0854 -- 29.9 299 -- --
63.36 0.371 9.71 -- 0.106 0.571 -- -- -0.0211 3.48 30 1857 -- --
44.68 0.312 9.72 -1.06 -- -- -- -- -0.0588 -- -- -- -- --
73.57 0.401 9.69 -- 0.125 -- -- -- 0.0563 4.61 -- -- -- --
63.83 0.372 9.7 -- -- 0.566 -- -- 0.00983 -- 29.71 1854 -- --
74.41 0.403 9.69 -- -- -- -- -- 0.059 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.03 temperature 30 270 < th dose independent rect. 16 22
2 37.04 temperature 25 10 > th dose dependent rect. 15 18
5 37.18 temperature 30 270 < th dose independent rect. 7 15
9 37.29 temperature 30 270 < th dose independent rect. 5 22
15 37.34 humidity 80 4320 > th dose dependent rect. 3 3
19 37.38 humidity 90 270 < th dose dependent rect. 12 5
22 37.41 humidity 80 90 < th dose independent rect. 14 6
26 37.45 humidity 90 270 < th dose independent rect. 17 20
31 37.48 humidity 70 270 < th dose independent rect. 12 5
40 37.53 wind 1 1440 > th dose independent rect. 2 3
42 37.56 humidity 80 10 < th dose independent rect. 15 5
85 37.70 temperature 15 270 > th dose independent rect. 17 20
86 37.70 humidity 90 10 < th dose dependent rect. 15 5
113 37.78 radiation 1 270 > th dose independent rect. 11 19
114 37.78 radiation 1 270 > th dose dependent sin 14 NA
115 37.78 humidity 50 4320 > th dose dependent rect. 3 3
119 37.79 temperature 15 270 > th dose independent rect. 8 14
124 37.82 wind 1 1440 < th dose independent rect. 2 3
143 37.85 humidity 50 4320 > th dose dependent rect. 3 1
151 37.87 temperature 30 270 > th dose independent rect. 11 6
168 37.88 radiation 20 270 > th dose independent rect. 13 19
184 37.91 temperature 15 90 > th dose independent rect. 19 19
186 37.92 radiation 10 270 > th dose independent sin 15 NA
187 37.92 humidity 60 270 > th dose independent rect. 7 15
205 37.96 temperature 30 270 > th dose independent rect. 18 23
207 37.97 temperature 30 270 < th dose independent sin 21 NA
209 37.97 humidity 70 270 < th dose independent rect. 15 1
211 37.97 temperature 20 270 > th dose dependent rect. 12 5
213 37.98 humidity 90 270 < th dose independent rect. 9 1
214 37.98 radiation 10 270 > th dose independent rect. 13 5
232 37.98 temperature 15 270 > th dose dependent rect. 11 20
236 37.99 humidity 90 270 < th dose dependent rect. 15 1
242 38.00 wind 7 43200 < th dose independent rect. 6 1
246 38.00 humidity 60 4320 > th dose dependent rect. 5 1
256 38.01 humidity 60 270 > th dose independent rect. 16 22
259 38.01 humidity 80 270 > th dose dependent rect. 22 14
260 38.02 humidity 70 270 < th dose independent sin 18 NA
267 38.02 radiation 1 270 > th dose dependent rect. 15 1
271 38.03 humidity 80 270 > th dose independent rect. 22 9
275 38.03 temperature 30 270 < th dose independent rect. 23 23
276 38.03 radiation 1 270 > th dose dependent rect. 13 19
284 38.05 temperature 30 270 > th dose independent sin 22 NA
288 38.05 radiation 1 270 > th dose independent rect. 11 8
298 38.05 temperature 20 270 > th dose dependent rect. 13 3
302 38.06 radiation 10 270 > th dose independent rect. 15 1
308 38.06 temperature 30 270 > th dose independent rect. 11 23
310 38.06 temperature 25 4320 > th dose dependent rect. 6 1
318 38.08 humidity 90 4320 < th dose independent rect. 3 3
341 38.09 temperature 30 270 < th dose independent no NA NA
347 38.09 humidity 60 270 > th dose independent rect. 6 21
365 38.11 temperature 25 10 > th dose dependent rect. 15 5
366 38.11 radiation 1 270 > th dose dependent rect. 13 5
399 38.14 radiation 30 1440 < th dose dependent rect. 18 5
409 38.15 temperature 10 270 > th dose dependent rect. 11 12
413 38.16 temperature 30 270 > th dose independent no NA NA
519 38.16 radiation 30 1440 < th dose dependent rect. 18 3
522 38.16 humidity 60 270 > th dose dependent rect. 22 11
616 38.22 temperature 30 720 < th dose independent rect. 9 2
633 38.23 temperature 30 720 < th dose independent rect. 7 6
648 38.24 temperature 20 10 > th dose independent rect. 9 6
649 38.24 humidity 60 270 > th dose independent rect. 7 18
652 38.24 wind 5 43200 > th dose dependent rect. 6 1
655 38.24 temperature 25 90 > th dose dependent rect. 13 7
692 38.26 humidity 80 270 > th dose dependent sin 8 NA
712 38.28 temperature 25 90 > th dose independent rect. 14 19
728 38.30 humidity 70 270 > th dose independent sin 19 NA
729 38.30 wind 7 43200 > th dose independent rect. 6 1
785 38.33 temperature 20 270 > th dose dependent rect. 15 1
844 38.37 temperature 10 720 > th dose dependent rect. 4 19
860 38.39 humidity 90 43200 > th dose independent rect. 10 1
867 38.39 radiation 20 1440 < th dose dependent rect. 18 1
894 38.41 temperature 30 4320 < th dose independent rect. 10 2
898 38.41 temperature 30 270 > th dose independent rect. 14 23
900 38.41 atmosphere 1015 270 < th dose dependent rect. 13 4
907 38.42 temperature 30 4320 < th dose independent rect. 8 4
908 38.42 humidity 90 10 < th dose independent rect. 9 6
910 38.42 temperature 30 4320 < th dose independent rect. 22 14
924 38.43 temperature 25 30 > th dose independent rect. 15 5
948 38.43 temperature 25 270 > th dose dependent rect. 11 9
967 38.44 humidity 70 270 > th dose independent rect. 14 8
991 38.45 temperature 30 4320 > th dose independent rect. 10 2
992 38.45 temperature 30 1440 > th dose independent rect. 12 2
993 38.45 temperature 30 4320 > th dose independent rect. 8 4