BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0867100 Os01g0867100|AK066461
         (162 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33840.1  | chr2:14315011-14317329 FORWARD LENGTH=386          142   7e-35
AT1G28350.1  | chr1:9944483-9949577 FORWARD LENGTH=749            137   3e-33

>AT2G33840.1 | chr2:14315011-14317329 FORWARD LENGTH=386
          Length = 385

 Score =  142 bits (358), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 83/107 (77%)

Query: 53  QVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTA 112
           + +++ KIK A+CPPK+ +GNPCLEYIKYIILPW+ +F V R +E GGNKT+ S E++ A
Sbjct: 275 EAEVNVKIKKAYCPPKVVKGNPCLEYIKYIILPWFDEFTVERNEEYGGNKTYKSFEDIAA 334

Query: 113 DYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKY 159
           DY SG LHPGD+K  L N+L KILQPV DHFK++A AK  L+ I+ Y
Sbjct: 335 DYESGELHPGDLKKGLMNALNKILQPVRDHFKTDARAKNLLKQIKAY 381



>AT1G28350.1 | chr1:9944483-9949577 FORWARD LENGTH=749
          Length = 748

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 83/107 (77%)

Query: 53  QVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTA 112
           + +++ KIK A+CPP + EGNPCLEY+K+IILPW+ +F V R+++ GGN+TF S E++T 
Sbjct: 261 EAEVNVKIKKAYCPPDIVEGNPCLEYVKHIILPWFSEFTVERDEKYGGNRTFKSFEDITT 320

Query: 113 DYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKY 159
           DY SG LHP D+K AL+ +L KILQPV DHFK+N+ AK  L+ ++ Y
Sbjct: 321 DYESGQLHPKDLKDALSKALNKILQPVRDHFKTNSRAKNLLKQVKGY 367




 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 1/107 (0%)

Query: 53  QVDISRKIKHAFCPPKLAEGNPCLEYIKYIILPWYGKFEVVREKEDGGNKTFLSMEELTA 112
           + D++ KI  A+CPPK  EGNPCLEY+KYI+LP + +F+V  EK +GGNKTF S E++ A
Sbjct: 639 EADVNEKISKAYCPPKTVEGNPCLEYVKYIVLPRFNEFKVESEK-NGGNKTFNSFEDIVA 697

Query: 113 DYVSGVLHPGDMKLALANSLIKILQPVYDHFKSNAEAKKALQGIEKY 159
           DY +G LHP D+K AL  +L   LQPV DHFK+N  AK  L+ ++ +
Sbjct: 698 DYETGELHPEDLKKALMKALNITLQPVRDHFKTNERAKNLLEQVKAF 744



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,402,625
Number of extensions: 136152
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)