BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0813900 Os01g0813900|AK101729
(801 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0813900 Similar to ZIGA1 protein (Fragment) 1543 0.0
Os03g0323500 Arf GTPase activating protein family protein 281 1e-75
Os02g0208900 Similar to ZIGA2 protein (Fragment) 198 1e-50
Os05g0534800 Arf GTPase activating protein family protein 167 3e-41
Os07g0563800 Arf GTPase activating protein family protein 88 3e-17
>Os01g0813900 Similar to ZIGA1 protein (Fragment)
Length = 801
Score = 1543 bits (3994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/801 (95%), Positives = 761/801 (95%)
Query: 1 MGSXXXXXXXXXXXXGLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRV 60
MGS GLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRV
Sbjct: 1 MGSRREEERNEKIIRGLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRV 60
Query: 61 KSVSMAKFTTQEVRSLEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKK 120
KSVSMAKFTTQEVRSLEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKK
Sbjct: 61 KSVSMAKFTTQEVRSLEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKK 120
Query: 121 YAGGKSTDKPVNDSESVKSSENLTRRXXXXXXXXXXXXXDFQYEDRRYGKQVDTLARRPS 180
YAGGKSTDKPVNDSESVKSSENLTRR DFQYEDRRYGKQVDTLARRPS
Sbjct: 121 YAGGKSTDKPVNDSESVKSSENLTRRPSSYHSYSQSPPYDFQYEDRRYGKQVDTLARRPS 180
Query: 181 DRAFFDGKLGSFLYSPGRLRDQMHEDRFANESTGSRFSDFSASSTGDIRNDVLSPSSQDT 240
DRAFFDGKLGSFLYSPGRLRDQMHEDRFANESTGSRFSDFSASSTGDIRNDVLSPSSQDT
Sbjct: 181 DRAFFDGKLGSFLYSPGRLRDQMHEDRFANESTGSRFSDFSASSTGDIRNDVLSPSSQDT 240
Query: 241 GYSSPSIHHSRNVSSENPPSHRHPNATSQIDFNGVRRSQRTXXXXXXXXXXXXXXXNKSV 300
GYSSPSIHHSRNVSSENPPSHRHPNATSQIDFNGVRRSQRT NKSV
Sbjct: 241 GYSSPSIHHSRNVSSENPPSHRHPNATSQIDFNGVRRSQRTGSSGSFGSFDGSSASNKSV 300
Query: 301 DSGALPDAPTEKPVNSAVNRQSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVH 360
DSGALPDAPTEKPVNSAVNRQSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVH
Sbjct: 301 DSGALPDAPTEKPVNSAVNRQSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVH 360
Query: 361 MVSVAKPPVSTQPTTSTNQDFFDQSMQHPVNSAAPIDLFAGFNQQAPSVPHRAVDVGSHS 420
MVSVAKPPVSTQPTTSTNQDFFDQSMQHPVNSAAPIDLFAGFNQQAPSVPHRAVDVGSHS
Sbjct: 361 MVSVAKPPVSTQPTTSTNQDFFDQSMQHPVNSAAPIDLFAGFNQQAPSVPHRAVDVGSHS 420
Query: 421 VPKETLHDVVVQKAVASSPPVQAEAPSTSHPVHHDLLSLSPLQEPSISSTPPSIDLFAGF 480
VPKETLHDVVVQKAVASSPPVQAEAPSTSHPVHHDLLSLSPLQEPSISSTPPSIDLFAGF
Sbjct: 421 VPKETLHDVVVQKAVASSPPVQAEAPSTSHPVHHDLLSLSPLQEPSISSTPPSIDLFAGF 480
Query: 481 DQQLPPTTSVQQSQPAEPSISSTPQSIDLFAGFDQQLPPTTSVQQSQQAAPLVADEGWAF 540
DQQLPPTTSVQQSQPAEPSISSTPQSIDLFAGFDQQLPPTTSVQQSQQAAPLVADEGWAF
Sbjct: 481 DQQLPPTTSVQQSQPAEPSISSTPQSIDLFAGFDQQLPPTTSVQQSQQAAPLVADEGWAF 540
Query: 541 FLDTPQHVSPTSISNVQAQVATAIAAFPPSESLAKGTNQSMLPTSPPNALIPQSYPLMMD 600
FLDTPQHVSPTSISNVQAQVATAIAAFPPSESLAKGTNQSMLPTSPPNALIPQSYPLMMD
Sbjct: 541 FLDTPQHVSPTSISNVQAQVATAIAAFPPSESLAKGTNQSMLPTSPPNALIPQSYPLMMD 600
Query: 601 QWSLNAEEVKTPVSKETSQPWNAFGASTGNTPNDSFTFNTISQVAPNHFNVPSVPHAEAR 660
QWSLNAEEVKTPVSKETSQPWNAFGASTGNTPNDSFTFNTISQVAPNHFNVPSVPHAEAR
Sbjct: 601 QWSLNAEEVKTPVSKETSQPWNAFGASTGNTPNDSFTFNTISQVAPNHFNVPSVPHAEAR 660
Query: 661 GPQDLPSSEPERLTPGDITPGFNVSPGDMAGPSFRGPLQQQLDIVPSQPAKSTNPFDMAF 720
GPQDLPSSEPERLTPGDITPGFNVSPGDMAGPSFRGPLQQQLDIVPSQPAKSTNPFDMAF
Sbjct: 661 GPQDLPSSEPERLTPGDITPGFNVSPGDMAGPSFRGPLQQQLDIVPSQPAKSTNPFDMAF 720
Query: 721 ESDVEASNMFMDLTSLQETLPNPHVNTDYSNLTESWIPHNSNMPYISSGPQGGLSYMATQ 780
ESDVEASNMFMDLTSLQETLPNPHVNTDYSNLTESWIPHNSNMPYISSGPQGGLSYMATQ
Sbjct: 721 ESDVEASNMFMDLTSLQETLPNPHVNTDYSNLTESWIPHNSNMPYISSGPQGGLSYMATQ 780
Query: 781 VQDSLMLNSAQGSFPPRNPFE 801
VQDSLMLNSAQGSFPPRNPFE
Sbjct: 781 VQDSLMLNSAQGSFPPRNPFE 801
>Os03g0323500 Arf GTPase activating protein family protein
Length = 540
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/237 (55%), Positives = 172/237 (72%), Gaps = 1/237 (0%)
Query: 16 GLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRVKSVSMAKFTTQEVRS 75
GL+KLPPNR+CINCN +GPQYVCT+FWTF+C+SCSGIHREFTHRVKSVSM+ FTTQEV +
Sbjct: 19 GLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRVKSVSMSTFTTQEVEA 78
Query: 76 LEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKKYAGGKSTDKPVNDSE 135
L+ GGNQRAR+ +LK++D Q+MRLPD+SN D +REFI+AVYV+++YAGG+ +++P D +
Sbjct: 79 LQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYAGGRFSERPPRDKQ 138
Query: 136 SVKSSENLTRRXXXXXXXXXXXXXDFQYEDRRYGKQVDTLARRPSDRAFFDGKLGSFLYS 195
+ K++E RR D+QYE+RR GKQ L R+P DGK+ F YS
Sbjct: 139 NQKNNEQEHRRASSYHSFSQSPPYDYQYEERRNGKQSVMLTRKPGSDRGHDGKMSGFAYS 198
Query: 196 PGRLRDQMHEDRFANESTGSRFSDFSASSTGD-IRNDVLSPSSQDTGYSSPSIHHSR 251
P L ++M EDRFANE++G R SD S SS + R SP+ D G SSPS+ ++
Sbjct: 199 PQSLHERMSEDRFANENSGPRISDCSGSSISNTFRTTPHSPNFLDKGCSSPSMQQNQ 255
>Os02g0208900 Similar to ZIGA2 protein (Fragment)
Length = 728
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 146/252 (57%), Gaps = 8/252 (3%)
Query: 16 GLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRVKSVSMAKFTTQEVRS 75
GL+KLP N++CINCN++GPQYVCTNFWTFIC +CSG HREFTHR KSVSMAKFT QEV +
Sbjct: 17 GLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHRAKSVSMAKFTAQEVSA 76
Query: 76 LEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKKYAGGKSTDKPVNDSE 135
L++GGN+RAR+I+ K+WD R PD+SN D++R FI+ VYV+++Y G +S D+P +
Sbjct: 77 LQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVERRYTGERSADRPPRGKD 136
Query: 136 SVKSSENLTRRXXXXXXXXXXXXXDFQYEDRR--YGKQVDTLARRPSDRAFFDGKLGSFL 193
K + RR + Y DRR G+ D +R + +
Sbjct: 137 D-KDEYSENRRSDGNWGGSRSPPYNESYSDRRSYSGRSDDRNSRYSYGERSPGYEHNDYK 195
Query: 194 YSPG--RLRDQMHEDRFANESTGSRFSDFSASSTGDIRNDVLSPSSQ-DTGYSSPSIHHS 250
SP + D+ EDR + RF D S R D SP+ Q +T SSP +
Sbjct: 196 KSPRYFEVDDRNREDRSGKTTPVQRFEDRRPSEP--QRPDNGSPNYQKETDGSSPVVRPV 253
Query: 251 RNVSSENPPSHR 262
R++ +N P R
Sbjct: 254 RDILGDNAPQLR 265
>Os05g0534800 Arf GTPase activating protein family protein
Length = 550
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 92/119 (77%), Gaps = 13/119 (10%)
Query: 16 GLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRVKSVSMAKFTTQEVRS 75
L+KLP NR+CINCNS+GPQYVCT+F TF+C+SCSGIHREFTHRVKS+SMAKFT+QEV +
Sbjct: 17 ALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHRVKSISMAKFTSQEVSA 76
Query: 76 LEQGGNQRARDIYLKDWDWQRMRLPDNSNP-------------DRIREFIRAVYVDKKY 121
L++GGN+R ++IYLK WD+Q LPD + DR+R FI+ VYVD+++
Sbjct: 77 LQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVDRLRNFIKIVYVDRRF 135
>Os07g0563800 Arf GTPase activating protein family protein
Length = 476
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 16 GLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREF---THRVKSVSMAKFTTQE 72
GL++LP NR+C +C S GP++ N FIC+ CSGIHR +V+S ++ + ++
Sbjct: 21 GLLRLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQ 80
Query: 73 VRSLEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDKKYAGGKSTDKPVN 132
V ++ GN+++ + LP N + I FIRA Y DK++ + +P +
Sbjct: 81 VAFIQSMGNEKSNSYW-------EAELPPNYDRVGIENFIRAKYEDKRWIPRNGSSRPSS 133
Query: 133 DSESVKSSENLT 144
+ KSSE+ T
Sbjct: 134 GARDEKSSESQT 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.126 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,037,205
Number of extensions: 1293880
Number of successful extensions: 3978
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3969
Number of HSP's successfully gapped: 5
Length of query: 801
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 692
Effective length of database: 11,344,475
Effective search space: 7850376700
Effective search space used: 7850376700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)