BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0802600 Os01g0802600|Os01g0802600
(301 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0802600 Similar to Circadian clock coupling factor ZGT 451 e-127
Os05g0494600 Conserved hypothetical protein 310 6e-85
Os03g0427000 Conserved hypothetical protein 197 6e-51
Os07g0598200 Conserved hypothetical protein 192 2e-49
Os10g0121300 Protein of unknown function DUF659 domain cont... 69 4e-12
Os11g0110200 68 1e-11
Os04g0325100 67 1e-11
Os06g0269100 67 1e-11
Os03g0166900 67 1e-11
Os11g0195200 65 6e-11
>Os01g0802600 Similar to Circadian clock coupling factor ZGT
Length = 301
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/270 (84%), Positives = 229/270 (84%)
Query: 1 MSGGTRNTRQFFEXXXXXXXXRTSIDEXXXXXXXXXXXXXXXXXXXXNTGILDEHVLSLV 60
MSGGTRNTRQFFE RTSIDE NTGILDEHVLSLV
Sbjct: 1 MSGGTRNTRQFFESSSSGGGGRTSIDEGRGVRDGGGGRVAAARGSGVNTGILDEHVLSLV 60
Query: 61 FRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLXXXXXXXXXXXXXRI 120
FRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASL RI
Sbjct: 61 FRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLAGAGAGGAAPPPGRI 120
Query: 121 VGGWPALAKMLFFCCGAAGPGVPGHFTRMSRFSKTSGRSFLSRRCRSDLLYVSDPCEHAV 180
VGGWPALAKMLFFCCGAAGPGVPGHFTRMSRFSKTSGRSFLSRRCRSDLLYVSDPCEHAV
Sbjct: 121 VGGWPALAKMLFFCCGAAGPGVPGHFTRMSRFSKTSGRSFLSRRCRSDLLYVSDPCEHAV 180
Query: 181 AGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGMVPRTAW 240
AGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGMVPRTAW
Sbjct: 181 AGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGMVPRTAW 240
Query: 241 RRLGCLEGRLEYYVCVSGHLHGNCWLARLT 270
RRLGCLEGRLEYYVCVSGHLHGNCWLARLT
Sbjct: 241 RRLGCLEGRLEYYVCVSGHLHGNCWLARLT 270
>Os05g0494600 Conserved hypothetical protein
Length = 307
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 158/224 (70%), Positives = 179/224 (79%), Gaps = 3/224 (1%)
Query: 48 NTGILDEHVLSLVFRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLXX 107
N GI+DE VL LVFR++NWDP+ +C A VSRR+RAVAERVLWRELC+SRAPRMV++L
Sbjct: 34 NAGIMDEKVLELVFRALNWDPRELCVVARVSRRLRAVAERVLWRELCVSRAPRMVSALSG 93
Query: 108 XXXXXXXXXXXRIVGGWPALAKMLFFCCGAAGPGVPGHFTRMSRFSKTSGRSFLSRRCRS 167
G WPA+AK+LFFCCGAAG VPGHF +SRFSKTSGRSFLSRRC
Sbjct: 94 PTAAVAAAAGRIGGG-WPAMAKLLFFCCGAAGAAVPGHFAPVSRFSKTSGRSFLSRRCAG 152
Query: 168 DLLYVSDPCEHAVAGAGDD--LGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGAR 225
DLL+VSDPCEHA A DD +GAYRGV+RGFMRSRTRA LVG +A L+PRVRCPYCGAR
Sbjct: 153 DLLFVSDPCEHAAGAASDDDVVGAYRGVYRGFMRSRTRAFLVGHRAPLEPRVRCPYCGAR 212
Query: 226 VWSMVAAGMVPRTAWRRLGCLEGRLEYYVCVSGHLHGNCWLARL 269
VWSM AAG+ PR+A R LG EGRLEY+VCVSGHLHG+CWLARL
Sbjct: 213 VWSMTAAGLAPRSACRWLGANEGRLEYFVCVSGHLHGSCWLARL 256
>Os03g0427000 Conserved hypothetical protein
Length = 247
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 50 GILDEHVLSLVFRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLXXXX 109
G + E L LVFR +NW+P+ + +CVS+ +A+RVLW+E C +RAPRM+ L
Sbjct: 21 GHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLWKEFCHARAPRMMQDLHSGG 80
Query: 110 XXXXXXXXXRIVGGWPALAKMLFFCCGAAGPG------VPGHFTRMSRFSKTSGRSFLSR 163
+ G W AL K+L C G G VPGHF +RFS+T G+S L
Sbjct: 81 SHI-------VDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRTRFSRTCGKSILPP 133
Query: 164 RCRSDLLYVSDPCEHAVAGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCG 223
+CR+D+LYVSDPCEH G DLG +RG+F+ F S+ + L+ +QA P+ CPYC
Sbjct: 134 QCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQAKFHPKEVCPYCK 193
Query: 224 ARVWSMVAAGMVPRTAWRRLGCLEGRLEYYVCVSGHLHGNCWL 266
A++W+++ A M+PR+A RL + +EYY+C++GH+ G C L
Sbjct: 194 AKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTL 236
>Os07g0598200 Conserved hypothetical protein
Length = 248
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 50 GILDEHVLSLVFRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLXXXX 109
G L E L LVFR +NW+P+ + +CV + VA++VLW+E C +RAP+M+ L
Sbjct: 21 GHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVLWKEFCHARAPKMMLDLHSGG 80
Query: 110 XXXXXXXXXRIVGGWPALAKMLFFCCGAAGPG------VPGHFTRMSRFSKTSGRSFLSR 163
+ G W AL K+L +C G G VPGHF +RFS+T+G+SFL +
Sbjct: 81 SHI-------VDGNWKALGKLLIYCNGCTKGGLFNNIHVPGHFVFRTRFSRTAGKSFLPQ 133
Query: 164 RCRSDLLYVSDPCEHAVAGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCG 223
+CR+D+LYVSDPCEH G DLG +RG+F F S+ + L+ ++A P CPYC
Sbjct: 134 QCRNDVLYVSDPCEHLDQGDEGDLGFFRGIFMSFATSKVKKMLIEKRARFHPSESCPYCK 193
Query: 224 ARVWSMVAAGMVPRTAWRRLGCLEGRLEYYVCVSGHLHG 262
A++WSM+ A M P ++ RLG E +EY+VC++GH+ G
Sbjct: 194 AKLWSMLEANMSPGSSSARLGAYEDSVEYFVCLNGHVIG 232
>Os10g0121300 Protein of unknown function DUF659 domain containing protein
Length = 754
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 179 AVAGA-GDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGM 234
AVAGA DD+ G +RGFM SRTRA LV + L+P VRCPYCGARVWSM AAG+
Sbjct: 8 AVAGAVYDDI---VGAYRGFMPSRTRAFLVIHRGLLEPHVRCPYCGARVWSMTAAGL 61
>Os11g0110200
Length = 109
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 179 AVAGA-GDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGM 234
AVAGA DD+ G +RGFM SRTRA LV + L+P VRCPYCGARVWSM AAG+
Sbjct: 8 AVAGAVYDDI---VGAYRGFMPSRTRAFLVIHRGPLEPHVRCPYCGARVWSMTAAGL 61
>Os04g0325100
Length = 402
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 42/60 (70%)
Query: 176 CEHAVAGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGMV 235
CEHA A AG GV+RGFMRSRT A LV +A L+PRVRCPYCGARVWSM G+
Sbjct: 217 CEHAAAAAGAAYDDVVGVYRGFMRSRTCAFLVIHRAPLEPRVRCPYCGARVWSMTTVGLT 276
>Os06g0269100
Length = 309
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 179 AVAGA-GDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGM 234
AVAGA DD+ G +RGFM SRTRA LV L+P VRCPYCGARVWSM AAG+
Sbjct: 190 AVAGAVYDDI---VGAYRGFMPSRTRAFLVIHHGPLEPHVRCPYCGARVWSMTAAGL 243
>Os03g0166900
Length = 328
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 179 AVAGA-GDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGMV 235
AVAGA DD+ G +RGFM SRTRA LV L+P VRCPYCGARVWSM AAG+
Sbjct: 190 AVAGAVYDDI---VGAYRGFMPSRTRAFLVIHHGPLEPHVRCPYCGARVWSMTAAGLA 244
>Os11g0195200
Length = 296
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 179 AVAGAG-DDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCGARVWSMVAAGM 234
AVAGA DD+ G +RGFM SRTRA LV L+P VRCPYCGA VWSM AAG+
Sbjct: 190 AVAGAVYDDI---VGAYRGFMPSRTRAFLVIHHGPLEPHVRCPYCGAHVWSMTAAGL 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,615,385
Number of extensions: 317407
Number of successful extensions: 963
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 10
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)