FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0494600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.15 (0.0389) R2 : 0.868
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.08 (0.102) R2dC : 0.754 R2C : 0.584
β3 : -3.88 (0.126) R2dE : 0.283 R2E : 0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.034 (0.0819) R2dN8 : 6.35e-05 R2N8 : -0.00102
σ : 0.73
deviance : 245.83
__
_____
C
peak time of C : 16.3
E
wheather : radiation
threshold : 2.561
memory length : 120
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.03 0.728 5.16 -0.449 5.09 -3.88 0.0893 0.839 -0.0165 16.4 2.115 112 14.6 --
241.39 0.724 5.16 -0.416 5.09 -3.9 0.249 -- -0.00852 16.3 2.32 115 14.6 --
239.65 0.721 5.16 -0.434 5.09 -3.9 -- 0.948 -0.00995 16.3 2.484 117 14.7 --
241.33 0.724 5.16 -0.41 5.08 -3.93 -- -- -0.00953 16.3 2.44 120 14.7 --
477.52 1.02 5.13 -0.294 -- -6.98 -- 2.48 -0.136 -- 6.109 764 13.4 --
466.31 1.01 5.08 -0.184 4.86 -- 0.0352 -- 0.0712 14.5 -- -- -- --
466.31 1.01 5.08 -0.183 4.86 -- -- -- 0.0714 14.5 -- -- -- --
462.55 1 5.12 -0.332 -- -6.7 -- -- -0.139 -- 7.154 752 12.8 --
245.83 0.73 5.15 -- 5.08 -3.88 -- -- 0.034 16.3 2.561 120 14.7 --
1853.74 2.01 5.11 -0.389 -- -- -- -- -0.0499 -- -- -- -- --
467.2 1.01 5.07 -- 4.86 -- -- -- 0.0918 14.5 -- -- -- --
441 0.978 5.07 -- -- -6 -- -- -0.133 -- 50.95 747 10.7 --
1857.74 2.01 5.1 -- -- -- -- -- -0.00669 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.25 radiation 1.0 90 < th dose dependent sin 20 NA
3 250.74 radiation 1.0 90 < th dose independent sin 20 NA
5 253.24 radiation 1.0 90 > th dose independent sin 20 NA
10 267.15 radiation 20.0 270 < th dose dependent rect. 13 8
12 268.10 radiation 10.0 270 < th dose dependent rect. 5 15
19 271.34 radiation 1.0 270 < th dose independent rect. 7 13
27 274.45 radiation 10.0 270 < th dose dependent rect. 9 11
39 277.62 radiation 1.0 270 < th dose independent rect. 9 11
42 277.88 radiation 1.0 90 < th dose independent rect. 7 16
44 278.20 radiation 20.0 270 < th dose independent rect. 13 9
50 278.78 radiation 20.0 270 < th dose independent rect. 15 6
58 279.39 radiation 1.0 90 < th dose independent rect. 13 10
62 280.03 radiation 1.0 270 < th dose independent rect. 13 7
64 280.16 radiation 1.0 90 < th dose dependent rect. 13 10
105 283.89 radiation 30.0 270 < th dose dependent rect. 15 18
153 290.00 radiation 1.0 270 > th dose independent rect. 9 8
163 291.33 humidity 50.0 270 > th dose dependent rect. 4 16
177 292.97 radiation 1.0 90 > th dose independent rect. 11 8
196 293.77 humidity 50.0 270 > th dose independent rect. 16 5
219 295.95 humidity 90.0 90 < th dose dependent rect. 11 7
235 297.33 humidity 50.0 270 > th dose dependent rect. 3 18
265 299.28 humidity 50.0 270 > th dose independent rect. 17 3
302 301.70 humidity 90.0 270 < th dose dependent rect. 9 7
309 302.02 precipitation 0.1 270 < th dose independent rect. 20 21
310 302.02 precipitation 0.1 270 < th dose dependent rect. 20 21
311 302.04 wind 9.0 270 < th dose independent rect. 21 19
314 302.08 wind 9.0 270 < th dose independent rect. 20 21
316 302.10 humidity 90.0 90 < th dose independent rect. 11 7
319 302.37 precipitation 0.1 270 < th dose independent rect. 21 19
320 302.37 precipitation 0.1 270 < th dose dependent rect. 21 19
330 303.57 humidity 50.0 270 > th dose independent rect. 15 7
333 303.73 radiation 40.0 90 < th dose independent rect. 18 17
354 305.49 temperature 10.0 270 > th dose independent rect. 16 5
355 305.49 radiation 40.0 270 < th dose independent rect. 16 5
356 305.49 temperature 10.0 270 > th dose independent rect. 21 19
365 305.73 humidity 70.0 270 > th dose independent rect. 3 17
369 305.86 temperature 10.0 270 > th dose independent rect. 17 3
370 305.86 atmosphere 1015.0 270 < th dose independent rect. 17 3
374 305.86 temperature 10.0 270 > th dose independent rect. 20 21
376 305.91 humidity 90.0 270 < th dose independent rect. 9 8
387 306.58 humidity 90.0 90 < th dose dependent rect. 9 9
398 306.87 humidity 60.0 90 > th dose independent rect. 18 17
413 307.53 atmosphere 1015.0 270 < th dose independent rect. 16 5
414 307.54 wind 9.0 270 < th dose independent rect. 17 3
415 307.56 humidity 90.0 270 < th dose dependent rect. 22 18
419 307.80 wind 1.0 270 > th dose independent rect. 16 5
425 307.96 radiation 20.0 270 < th dose independent rect. 15 18
430 308.12 wind 9.0 270 < th dose independent rect. 16 5
452 308.34 wind 1.0 270 > th dose independent rect. 17 3
469 309.10 temperature 10.0 90 > th dose dependent rect. 11 7
470 309.12 humidity 50.0 270 > th dose independent rect. 16 17
489 309.85 humidity 50.0 270 > th dose independent rect. 4 16
505 310.63 atmosphere 995.0 270 > th dose independent rect. 17 3
538 311.61 atmosphere 995.0 270 > th dose independent rect. 21 19
561 312.31 precipitation 0.1 90 < th dose independent rect. 11 7
562 312.31 precipitation 0.1 90 < th dose dependent rect. 11 7
563 312.35 precipitation 0.1 270 < th dose independent rect. 17 3
564 312.35 precipitation 0.1 270 < th dose dependent rect. 17 3
593 313.14 temperature 20.0 90 > th dose independent rect. 11 7
620 313.55 precipitation 0.1 270 < th dose independent rect. 16 5
621 313.55 precipitation 0.1 270 < th dose dependent rect. 16 5
633 314.09 atmosphere 995.0 270 > th dose independent rect. 16 5
635 314.14 humidity 90.0 90 < th dose dependent rect. 7 11
679 315.30 wind 9.0 90 < th dose independent rect. 11 7
692 315.78 precipitation 0.1 270 < th dose independent rect. 9 8
693 315.78 precipitation 0.1 270 < th dose dependent rect. 9 8
743 317.42 wind 9.0 270 < th dose independent rect. 9 8
752 317.63 temperature 15.0 270 > th dose independent rect. 9 8
771 318.28 atmosphere 1015.0 90 < th dose independent rect. 11 7
772 318.28 temperature 10.0 90 > th dose independent rect. 18 17
776 318.52 atmosphere 995.0 90 > th dose independent rect. 18 17
793 318.92 wind 9.0 90 < th dose independent rect. 18 17
802 319.13 atmosphere 995.0 270 > th dose independent rect. 20 21
885 321.03 atmosphere 1015.0 270 < th dose independent rect. 9 8
945 322.17 humidity 50.0 270 > th dose dependent rect. 17 3
953 322.26 atmosphere 1015.0 270 < th dose independent rect. 22 18
971 322.65 wind 9.0 270 < th dose dependent rect. 17 3
987 323.09 wind 9.0 10 < th dose independent rect. 22 21
994 323.33 precipitation 0.1 270 < th dose independent rect. 11 15
995 323.33 precipitation 0.1 270 < th dose dependent rect. 11 15