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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0802600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Circadian clock coupling factor ZGT.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0359) R2 : 0.251
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.578 (0.0884) R2dC : 0.0707 R2C : 0.0443
β3 : 1.04 (0.0957) R2dE : 0.199 R2E : 0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0798 (0.0761) R2dN8 : 0.00237 R2N8 : 0.00747
σ : 0.67
deviance : 207.12
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_____
C
peak time of C : 9.5
E
wheather : temperature
threshold : 28.49
memory length : 1246
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.94 0.661 3.52 -2.51 0.585 2.47 -0.156 -12.6 -0.0242 9.27 30.04 1284 -- --
217.37 0.687 3.32 -0.369 0.582 1.05 -0.414 -- -0.234 9.07 26.6 2647 -- --
197.95 0.655 3.52 -2.46 0.584 2.44 -- -12.5 -0.0366 9.14 30.6 1292 -- --
203.92 0.665 3.28 -0.357 0.601 1.1 -- -- -0.114 9.3 28.4 1245 -- --
214.87 0.683 3.5 -2.03 -- 2.54 -- -12.7 -0.0642 -- 33.9 1373 -- --
258.51 0.754 3.31 -0.0421 0.507 -- -0.281 -- -0.22 8.38 -- -- -- --
258.76 0.753 3.31 -0.0508 0.508 -- -- -- -0.22 8.37 -- -- -- --
222.49 0.695 3.3 -0.366 -- 1.01 -- -- -0.14 -- 28.17 1310 -- --
207.12 0.67 3.28 -- 0.578 1.04 -- -- -0.0798 9.5 28.49 1246 -- --
273.11 0.772 3.32 -0.0478 -- -- -- -- -0.215 -- -- -- -- --
258.83 0.753 3.31 -- 0.508 -- -- -- -0.214 8.37 -- -- -- --
225.41 0.699 3.3 -- -- 0.985 -- -- -0.0242 -- 33.1 1418 -- --
273.17 0.771 3.32 -- -- -- -- -- -0.209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.84 humidity 50 1440 < th dose independent rect. 16 1
2 197.85 humidity 50 1440 < th dose dependent rect. 16 1
3 198.52 temperature 30 1440 > th dose dependent rect. 15 21
4 198.53 humidity 50 1440 > th dose independent rect. 15 2
5 198.66 humidity 50 1440 > th dose independent rect. 15 14
7 198.71 humidity 50 1440 > th dose independent rect. 15 5
9 198.73 humidity 50 1440 > th dose independent rect. 15 9
11 198.74 humidity 50 1440 > th dose independent rect. 15 18
23 199.03 temperature 30 1440 > th dose dependent sin 11 NA
27 199.25 temperature 30 1440 > th dose dependent rect. 15 4
43 199.33 temperature 30 1440 < th dose independent rect. 16 20
88 199.83 temperature 30 1440 < th dose independent rect. 18 18
91 199.87 temperature 30 1440 > th dose independent rect. 16 20
95 199.97 humidity 50 1440 > th dose independent sin 12 NA
100 200.12 temperature 30 1440 > th dose independent rect. 18 18
115 200.13 temperature 30 1440 > th dose dependent rect. 15 1
118 200.19 humidity 50 1440 < th dose independent sin 11 NA
121 200.23 temperature 30 1440 > th dose dependent rect. 9 10
150 200.30 temperature 30 1440 > th dose independent rect. 9 3
152 200.30 temperature 30 1440 > th dose dependent no NA NA
261 200.36 radiation 40 14400 > th dose dependent rect. 15 17
263 200.36 temperature 30 1440 > th dose dependent rect. 17 23
284 200.52 temperature 30 1440 < th dose independent rect. 9 3
292 200.63 humidity 60 1440 < th dose dependent rect. 16 3
359 200.82 radiation 30 14400 > th dose independent rect. 16 1
399 200.96 temperature 30 1440 < th dose independent sin 10 NA
417 201.07 temperature 25 1440 > th dose dependent rect. 6 2
504 201.58 temperature 30 1440 < th dose independent rect. 10 1
505 201.59 temperature 30 1440 > th dose independent sin 10 NA
529 202.02 humidity 60 1440 < th dose dependent sin 12 NA
552 202.18 temperature 30 1440 < th dose independent rect. 1 11
563 202.22 temperature 30 1440 < th dose independent rect. 3 9
573 202.22 radiation 30 14400 > th dose dependent rect. 16 1
588 202.24 temperature 30 1440 < th dose independent rect. 22 14
614 202.35 temperature 30 1440 < th dose independent rect. 6 6
659 202.63 temperature 30 1440 > th dose dependent rect. 11 1
664 202.73 wind 1 1440 < th dose independent rect. 4 2
667 202.78 wind 9 43200 > th dose dependent rect. 12 19
668 202.79 wind 9 43200 > th dose dependent rect. 13 17
684 202.82 wind 5 43200 > th dose dependent rect. 10 6
726 203.25 wind 7 43200 < th dose independent rect. 2 15
758 203.36 wind 9 43200 > th dose independent rect. 13 19
763 203.45 wind 7 43200 > th dose independent rect. 2 15
778 203.47 wind 9 43200 < th dose independent rect. 13 19
824 203.60 wind 5 43200 > th dose dependent rect. 3 14
892 204.09 temperature 30 1440 < th dose independent rect. 15 14
913 204.13 temperature 30 1440 < th dose independent rect. 15 9
914 204.13 temperature 30 1440 < th dose independent rect. 15 16
915 204.14 temperature 30 1440 < th dose independent rect. 15 5
922 204.16 wind 7 43200 > th dose independent rect. 6 11
956 204.22 wind 7 43200 > th dose dependent sin 20 NA
976 204.32 temperature 30 1440 > th dose independent rect. 15 4