FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0121300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF659 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0359) R2 : 0.436
β1 : 2.05 (0.126) R2dD : 0.341 R2D : 0.255
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.26 (0.168) R2dE : 0.101 R2E : -0.0395
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.86 (0.0872) R2dN8 : 0.228 R2N8 : -0.0651
σ : 0.642
deviance : 190.03
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 73.63
memory length : 5905
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.48 0.621 3.72 1.94 0.439 1.07 0.405 2.23 0.635 21.7 71 6047 -- --
179.86 0.625 3.71 2.07 0.414 1.23 0.409 -- 0.745 21.6 73 6014 -- --
175.08 0.616 3.72 1.93 0.439 1.07 -- 2.23 0.636 21.5 70.96 6051 -- --
179.63 0.624 3.68 2.04 0.434 1.27 -- -- 0.852 21.2 73.7 6059 -- --
186.15 0.635 3.71 1.94 -- 1.06 -- 2.17 0.641 -- 70 5972 -- --
202.39 0.667 3.76 2.12 0.421 -- 0.35 -- 0.506 22.1 -- -- -- --
202.87 0.667 3.76 2.11 0.42 -- -- -- 0.506 22 -- -- -- --
190.03 0.642 3.67 2.05 -- 1.26 -- -- 0.86 -- 73.63 5905 -- --
280.56 0.78 3.68 -- 0.482 1.43 -- -- 0.849 21.5 82.31 7579 -- --
213.5 0.683 3.75 2.11 -- -- -- -- 0.506 -- -- -- -- --
319.84 0.837 3.81 -- 0.43 -- -- -- 0.271 22.4 -- -- -- --
291.01 0.795 3.66 -- -- 1.47 -- -- 0.884 -- 82.82 7359 -- --
331.14 0.849 3.8 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.78 humidity 70.0 4320 < th dose independent rect. 15 1
3 175.05 humidity 60.0 14400 < th dose independent rect. 12 1
4 175.20 humidity 70.0 4320 > th dose independent rect. 15 2
5 175.21 humidity 70.0 4320 < th dose independent rect. 10 10
17 175.38 humidity 50.0 4320 > th dose dependent rect. 13 1
18 175.43 humidity 70.0 4320 < th dose independent sin 17 NA
37 175.65 humidity 70.0 4320 > th dose independent rect. 10 10
41 175.68 humidity 70.0 4320 > th dose independent rect. 10 15
48 175.70 humidity 70.0 14400 < th dose independent rect. 18 15
51 175.77 humidity 70.0 4320 < th dose independent rect. 14 6
89 175.85 humidity 70.0 4320 < th dose independent rect. 10 7
103 175.91 humidity 70.0 4320 > th dose independent sin 17 NA
127 175.95 humidity 60.0 14400 < th dose independent rect. 11 3
131 175.98 humidity 70.0 4320 > th dose independent rect. 15 5
132 175.99 humidity 70.0 4320 > th dose independent rect. 15 11
134 176.00 humidity 70.0 4320 > th dose independent rect. 15 8
161 176.16 humidity 90.0 4320 < th dose dependent rect. 13 1
176 176.24 humidity 70.0 14400 > th dose independent rect. 18 15
190 176.32 humidity 60.0 4320 > th dose independent rect. 13 1
194 176.37 humidity 70.0 4320 < th dose independent rect. 18 23
205 176.46 humidity 70.0 4320 > th dose independent rect. 18 23
254 176.68 humidity 80.0 4320 < th dose dependent rect. 15 1
302 176.90 humidity 80.0 1440 < th dose independent rect. 11 2
324 176.91 humidity 70.0 4320 > th dose independent no NA NA
370 176.92 humidity 70.0 4320 < th dose independent no NA NA
417 176.92 humidity 80.0 4320 < th dose dependent rect. 13 4
419 176.94 precipitation 0.1 14400 < th dose independent rect. 18 1
420 176.94 precipitation 0.1 14400 < th dose dependent rect. 18 1
424 176.97 precipitation 0.1 14400 > th dose independent rect. 18 1
427 176.97 humidity 70.0 4320 > th dose independent rect. 14 23
442 177.06 humidity 60.0 14400 < th dose independent rect. 16 22
450 177.10 humidity 80.0 14400 > th dose independent rect. 9 2
452 177.11 humidity 70.0 4320 < th dose independent rect. 13 23
482 177.23 humidity 80.0 14400 < th dose independent rect. 10 1
485 177.23 humidity 80.0 4320 < th dose dependent rect. 12 10
505 177.25 humidity 70.0 4320 > th dose independent rect. 24 17
517 177.26 humidity 60.0 14400 < th dose dependent sin 13 NA
518 177.26 humidity 80.0 4320 < th dose dependent rect. 12 12
551 177.33 humidity 70.0 14400 < th dose independent sin 10 NA
579 177.40 humidity 70.0 14400 > th dose independent sin 10 NA
619 177.53 humidity 60.0 14400 < th dose dependent rect. 15 18
684 177.64 humidity 80.0 14400 > th dose independent rect. 8 4
686 177.64 humidity 60.0 14400 < th dose dependent rect. 15 5
749 177.73 humidity 70.0 14400 < th dose dependent sin 16 NA
781 177.75 humidity 90.0 14400 < th dose dependent rect. 8 14
829 177.82 precipitation 0.1 4320 < th dose independent rect. 3 14
833 177.82 precipitation 0.1 4320 < th dose dependent rect. 3 14
862 177.85 precipitation 0.1 4320 > th dose independent rect. 3 14
879 177.85 humidity 70.0 14400 < th dose dependent rect. 15 23
919 177.90 humidity 90.0 14400 < th dose dependent sin 22 NA
947 177.92 humidity 50.0 4320 > th dose dependent rect. 15 1
969 177.94 precipitation 0.1 4320 < th dose independent rect. 2 18
979 177.94 precipitation 0.1 4320 < th dose dependent rect. 2 18
989 177.95 humidity 70.0 14400 < th dose dependent rect. 15 20
991 177.96 precipitation 0.1 4320 > th dose independent sin 2 NA
992 177.96 precipitation 0.1 4320 < th dose independent sin 2 NA
995 177.96 precipitation 0.1 4320 < th dose dependent sin 2 NA