BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0784800 Os01g0784800|AK059820
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0784800 Flavodoxin/nitric oxide synthase domain contai... 385 e-107
Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor bi... 348 1e-96
Os08g0139200 Similar to F-171-b1_1 (Fragment) 318 2e-87
Os03g0748500 Flavodoxin/nitric oxide synthase domain contai... 210 7e-55
Os10g0436800 Similar to 1,4-benzoquinone reductase 107 7e-24
>Os01g0784800 Flavodoxin/nitric oxide synthase domain containing protein
Length = 203
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/203 (94%), Positives = 192/203 (94%)
Query: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV
Sbjct: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
Query: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXX 120
PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFS
Sbjct: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSTGTQG 120
Query: 121 XXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
PLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM
Sbjct: 121 GGQETTPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
Query: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
ELEHAFHQGKYFAGIAKKLKGSA
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
>Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor binding protein)
Length = 205
Score = 348 bits (894), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/203 (83%), Positives = 178/203 (87%)
Query: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
MAVKVYVVYYSMYGHVAKLAEEIKKGASS+EGVE KIWQVPETL EEVLGKMGAPP+ D
Sbjct: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60
Query: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXX 120
P I PQEL EADG+LFGFPTRFGMMAAQMKAFFDATGGLW EQSLAGKPAG+FFS
Sbjct: 61 PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSTGTQG 120
Query: 121 XXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
PLTA+TQL HHGMVFVPVGYTFGAKMF+M V GGSPYGAGTFA DGSRWP+E
Sbjct: 121 GGQETTPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180
Query: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
ELEHAFHQGKYFAGIAKKLKG++
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGAS 203
>Os08g0139200 Similar to F-171-b1_1 (Fragment)
Length = 203
Score = 318 bits (814), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/203 (75%), Positives = 170/203 (83%)
Query: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
MA K+Y+VYYSMYGHVAKLAEEI+KGASS+EGVE K+WQVPETL ++VL KMGAP K DV
Sbjct: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
Query: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXX 120
P ITP EL EADG++FGFPTRFGMMAAQ KAF DATGGLW Q LAGKPAGIF+S
Sbjct: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
PLTAITQL HHGM+FVPVGYTFGA MF M +V+GGSPYG+GTFA DGSR TE+
Sbjct: 121 GGQETTPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
Query: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
EL+ AFHQGKYFAGIAKKLKGSA
Sbjct: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
>Os03g0748500 Flavodoxin/nitric oxide synthase domain containing protein
Length = 252
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 133/204 (65%), Gaps = 7/204 (3%)
Query: 3 VKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPP------ 56
V++YVV+YSMYGHV LA + +G S+ G A +++VPETL VL +M A
Sbjct: 44 VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEADDGGGGGD 103
Query: 57 -KPDVPTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFS 115
+ +P + P L +ADG LFGFP RFG M AQM+AFFD+T L Q LAGKPAG+F S
Sbjct: 104 GEDVIPVVDPDGLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
Query: 116 XXXXXXXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSR 175
TAITQL HHGM+FVP+GYTFG M MGE++GGSPYGAG F+ DGSR
Sbjct: 164 TGTQAGGQETTAWTAITQLAHHGMLFVPIGYTFGEGMLEMGELRGGSPYGAGVFSGDGSR 223
Query: 176 WPTEMELEHAFHQGKYFAGIAKKL 199
P+E+EL A H GKY A + KK+
Sbjct: 224 PPSELELALAEHHGKYMATLVKKM 247
>Os10g0436800 Similar to 1,4-benzoquinone reductase
Length = 83
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 57/71 (80%)
Query: 129 TAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEMELEHAFHQ 188
TAITQ+ HHGM+FVP+GYTFG+ MF M E++GGSPYGAG FA DGSR P+E EL A HQ
Sbjct: 10 TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69
Query: 189 GKYFAGIAKKL 199
GKY A I KKL
Sbjct: 70 GKYMASIVKKL 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,262,796
Number of extensions: 310798
Number of successful extensions: 674
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)