BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0780900 Os01g0780900|J100041C23
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0780900 Conserved hypothetical protein 396 e-110
Os04g0297800 Conserved hypothetical protein 129 3e-30
Os07g0162450 Conserved hypothetical protein 91 9e-19
Os03g0299700 Conserved hypothetical protein 91 1e-18
Os06g0543601 Conserved hypothetical protein 87 2e-17
Os07g0133050 80 2e-15
Os08g0195400 Conserved hypothetical protein 77 2e-14
Os02g0265300 Conserved hypothetical protein 75 7e-14
Os01g0108500 Conserved hypothetical protein 73 3e-13
Os07g0610650 73 3e-13
Os07g0442800 Conserved hypothetical protein 68 1e-11
Os01g0567200 Conserved hypothetical protein 65 8e-11
>Os01g0780900 Conserved hypothetical protein
Length = 349
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/231 (86%), Positives = 200/231 (86%)
Query: 119 SDAACGVCGGADPXXXXXXXXXXXXXXXXXXXPVCSGGDGVDAACGDSGGARAVSHVVAS 178
SDAACGVCGGADP PVCSGGDGVDAACGDSGGARAVSHVVAS
Sbjct: 119 SDAACGVCGGADPVRSGGSGSVAARGDGGVADPVCSGGDGVDAACGDSGGARAVSHVVAS 178
Query: 179 SCFQLCRCFMVQXXXXXXXXXXXXGQKLICSHSSASSLKVGCSSDSSILLFPNRRNHVGF 238
SCFQLCRCFMVQ GQKLICSHSSASSLKVGCSSDSSILLFPNRRNHVGF
Sbjct: 179 SCFQLCRCFMVQAISFSAISIISAGQKLICSHSSASSLKVGCSSDSSILLFPNRRNHVGF 238
Query: 239 VIRVELGPPDEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQ 298
VIRVELGPPDEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQ
Sbjct: 239 VIRVELGPPDEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQ 298
Query: 299 GSSRRGFAADPCRLAPFSDVRLFQEGCFRSSVNPPFLRMALLLGYVMGFIP 349
GSSRRGFAADPCRLAPFSDVRLFQEGCFRSSVNPPFLRMALLLGYVMGFIP
Sbjct: 299 GSSRRGFAADPCRLAPFSDVRLFQEGCFRSSVNPPFLRMALLLGYVMGFIP 349
>Os04g0297800 Conserved hypothetical protein
Length = 234
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 68/93 (73%), Gaps = 16/93 (17%)
Query: 205 KLICSHSSASSLKVGCSSDSSILLFPNRRNHVGFVIRVELGPP----------------D 248
KLICSHSSA SLKVGCSSDS LLFPNRRNH GFVIRVEL P D
Sbjct: 142 KLICSHSSAPSLKVGCSSDSPFLLFPNRRNHAGFVIRVELEPSAQFQLTGLMLELLRFND 201
Query: 249 EPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGS 281
EPRGDP LSPV HTPKSTAQ QTSVLCRFRGGS
Sbjct: 202 EPRGDPSLSPVMHTPKSTAQQQTSVLCRFRGGS 234
>Os07g0162450 Conserved hypothetical protein
Length = 149
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 216 LKVGCSSDSSILLFPNRRNHVGFVIRVE----LGPPDEPRGDPLLSPVTHTPKSTAQHQT 271
+ CS +S LL N H G +IRVE L + G LLSPV TPKSTA+ QT
Sbjct: 1 MWTTCSPESCFLLLQNSSIHAGSIIRVEQSLLLISNERLYGTNLLSPVIPTPKSTARQQT 60
Query: 272 SVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPCR---LAPFSDVRLF 321
S LCRFRG S L VCQA C S EA+G +RRGFAA+ CR L F +R F
Sbjct: 61 SDLCRFRGDSCSSLPVCQAVCMSMEAKGFNRRGFAAELCRSNSLLLFCFIRKF 113
>Os03g0299700 Conserved hypothetical protein
Length = 99
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 220 CSSDSSILLFPNRRNHVGFVIRVE----LGPPDEPRGDPLLSPVTHTPKSTAQHQTSVLC 275
CS++S LL N H G +IRVE L + G LLSPV TPKSTAQ QTS LC
Sbjct: 5 CSTESCFLLLQNNSIHTGSIIRVEQSLLLRSNERLHGTNLLSPVIPTPKSTAQKQTSDLC 64
Query: 276 RFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPC 310
RFRG S L VCQA C S EA+G +RRGFAA C
Sbjct: 65 RFRGDSCRSLPVCQAVCMSMEAKGFNRRGFAAKLC 99
>Os06g0543601 Conserved hypothetical protein
Length = 83
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 248 DEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAA 307
D+ RG+PLLSPV TPKSTAQ QTS LCRF G SRWGL CQ +CTS EAQGSSRRG AA
Sbjct: 15 DKLRGNPLLSPVMLTPKSTAQQQTS-LCRFHGDSRWGLMACQVECTSNEAQGSSRRGSAA 73
>Os07g0133050
Length = 251
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 54/95 (56%), Gaps = 16/95 (16%)
Query: 204 QKLICSHSSASSLKVGCSSDSSILLFPNRRNHVGFVIRVELGP----------------P 247
Q+ +CSH +A +KV S S LL RNH FVIRVELGP
Sbjct: 141 QEDLCSHYNARMMKVDWSLVQSSLLCLISRNHAEFVIRVELGPHARFRSTGFLLEFLRFN 200
Query: 248 DEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSR 282
DE RGDPLL PV TP STAQH TSVLC F GGSR
Sbjct: 201 DELRGDPLLCPVKLTPISTAQHHTSVLCCFCGGSR 235
>Os08g0195400 Conserved hypothetical protein
Length = 283
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 235 HVGFVIRVELGP---PDEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQAD 291
H G+ IRVEL E RG+ LSPV TPKSTAQ Q S LCR G R GL V QA
Sbjct: 189 HAGWAIRVELMLLRFKGELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAV 248
Query: 292 CTSFEAQGSSRRGFAADP 309
C S E QGS+RRGFAA P
Sbjct: 249 CMSKETQGSNRRGFAAAP 266
>Os02g0265300 Conserved hypothetical protein
Length = 251
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 235 HVGFVIRVELGP---PDEPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQAD 291
H G IRVEL E RG+ LSPV PKSTAQ Q S LC F GG R GLTV QA
Sbjct: 135 HAGCAIRVELKLLRFNGELRGEVWLSPVKLPPKSTAQQQISNLCSFCGGDRRGLTVRQAV 194
Query: 292 CTSFEAQGSSRRGFAADPCRLAP 314
C E QG + GFAA PCR AP
Sbjct: 195 CMLKETQGCNCHGFAAAPCRFAP 217
>Os01g0108500 Conserved hypothetical protein
Length = 306
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 204 QKLICSHSSAS-SLKVGCSSDSSILLFPNRRNHVGFVIRVELGP---PDEPRGDPLLSPV 259
Q+ IC HSSAS L + + SS + FP H GFV+RVEL DE RG LLSPV
Sbjct: 164 QQFICHHSSASVGLGIWMWAPSSSV-FPTSSFHAGFVVRVELTLLRFNDELRGLLLLSPV 222
Query: 260 THTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPCRLAPFSDVR 319
+ F + W L VCQA CT EAQG RRG AA PCR AP
Sbjct: 223 MLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAPCRCAPSLQCG 282
Query: 320 LFQEGCFRSSVNPPF 334
+ S+V+P F
Sbjct: 283 FITKFVALSAVSPFF 297
>Os07g0610650
Length = 170
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 41/63 (65%)
Query: 252 GDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPCR 311
G+ LSPV TPKSTAQ Q S LC F G R GL V QA C E QG +RRGFAA PCR
Sbjct: 74 GEVWLSPVKPTPKSTAQQQISNLCNFYEGDRRGLLVRQAVCMLKETQGCNRRGFAAAPCR 133
Query: 312 LAP 314
AP
Sbjct: 134 FAP 136
>Os07g0442800 Conserved hypothetical protein
Length = 70
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 41/59 (69%)
Query: 257 SPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPCRLAPF 315
SPV TPKST Q QT LCR RGG++ GL+VCQA CTS +A G SRRG AA P L +
Sbjct: 1 SPVKLTPKSTTQQQTFNLCRSRGGNQRGLSVCQAVCTSMKAHGCSRRGNAATPVDLIHY 59
>Os01g0567200 Conserved hypothetical protein
Length = 272
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 204 QKLICSHSSAS-SLKVGCSSDSSILLFPNRRNHVGFVIRVELGP---PDEPRGDPLLSPV 259
Q+ +C HSS+S L + + SS + FP H FV+RVEL DE RG LLSPV
Sbjct: 163 QQFVCHHSSSSVGLGIWMWAPSSSV-FPTSSFHARFVVRVELTLLRFNDELRGLLLLSPV 221
Query: 260 THTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPC 310
+ F + WGL VCQA CT EAQG RRG AA PC
Sbjct: 222 MPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAPC 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,288,142
Number of extensions: 322650
Number of successful extensions: 1070
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1058
Number of HSP's successfully gapped: 13
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)