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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0108500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.38 (0.0495) R2 : 0.168
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.564 (0.13) R2dC : 0.0347 R2C : 0.0139
β3 : 2.85 (0.367) R2dE : 0.112 R2E : 0.0746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.501 (0.104) R2dN8 : 0.0545 R2N8 : 0.0312
σ : 0.928
deviance : 396.84
__
_____
C
peak time of C : 6.13
E
wheather : wind
threshold : 10.66
memory length : 907
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.13 0.939 4.4 0.0332 0.593 3.51 1.03 3.15 0.483 5.89 10.76 742 -- --
393.56 0.924 4.38 0.0565 0.537 2.91 1.48 -- 0.539 5.95 10.65 907 -- --
396.36 0.927 4.41 0.0857 0.562 3.69 -- 3.8 0.473 6.07 10.64 907 -- --
396.78 0.928 4.38 0.045 0.559 2.87 -- -- 0.508 6.16 10.66 907 -- --
411.71 0.945 4.41 0.145 -- 4.05 -- 5.62 0.533 -- 10.56 907 -- --
442.62 0.986 4.41 -0.212 0.485 -- 1.52 -- 0.41 5.83 -- -- -- --
448.2 0.991 4.41 -0.202 0.495 -- -- -- 0.403 5.54 -- -- -- --
412.9 0.946 4.39 0.0685 -- 2.81 -- -- 0.53 -- 10.58 940 -- --
396.84 0.928 4.38 -- 0.564 2.85 -- -- 0.501 6.13 10.66 907 -- --
460.95 1 4.42 -0.186 -- -- -- -- 0.416 -- -- -- -- --
449.28 0.992 4.4 -- 0.492 -- -- -- 0.426 5.55 -- -- -- --
412.96 0.946 4.4 -- -- 2.77 -- -- 0.51 -- 10.58 930 -- --
461.86 1 4.41 -- -- -- -- -- 0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.16 wind 1 43200 < th dose independent rect. 2 1
2 395.13 wind 9 720 > th dose independent rect. 12 4
3 395.13 wind 1 43200 < th dose independent rect. 9 4
4 395.25 wind 9 720 > th dose dependent rect. 13 2
7 395.57 wind 1 43200 > th dose independent rect. 10 3
9 395.60 wind 9 720 > th dose independent rect. 13 1
10 395.61 wind 1 43200 < th dose independent rect. 10 1
16 396.22 wind 1 43200 < th dose independent rect. 9 16
20 396.53 wind 1 43200 < th dose dependent rect. 9 15
22 396.76 wind 1 43200 > th dose independent rect. 10 1
29 396.98 wind 1 43200 > th dose independent rect. 9 16
47 397.89 radiation 1 4320 < th dose dependent rect. 16 14
53 398.03 wind 1 43200 > th dose independent rect. 2 1
63 398.30 radiation 1 14400 > th dose independent rect. 18 1
76 398.46 wind 7 720 < th dose independent rect. 20 19
77 398.47 radiation 1 4320 < th dose dependent rect. 21 8
84 398.72 radiation 1 43200 > th dose independent rect. 16 1
85 398.72 radiation 1 43200 < th dose independent rect. 16 1
88 398.83 radiation 1 4320 < th dose dependent rect. 4 1
116 399.47 wind 9 43200 > th dose dependent rect. 12 1
126 399.65 radiation 1 4320 > th dose independent rect. 16 14
135 399.78 radiation 1 4320 < th dose independent rect. 16 14
136 399.81 wind 1 43200 < th dose dependent rect. 10 1
141 399.91 atmosphere 1015 43200 < th dose independent rect. 9 1
144 399.94 atmosphere 1015 43200 > th dose independent rect. 9 1
147 399.98 radiation 1 14400 < th dose independent rect. 18 6
150 400.00 radiation 1 14400 < th dose independent rect. 18 8
152 400.06 radiation 1 14400 < th dose independent rect. 18 1
161 400.28 atmosphere 1010 14400 < th dose independent rect. 15 1
162 400.31 atmosphere 1010 14400 > th dose independent rect. 15 1
163 400.33 wind 1 43200 < th dose dependent sin 19 NA
166 400.38 wind 1 43200 < th dose independent rect. 2 5
169 400.39 wind 1 43200 < th dose dependent rect. 6 1
178 400.52 radiation 10 1440 < th dose dependent rect. 8 1
180 400.53 atmosphere 1015 43200 > th dose independent rect. 8 3
182 400.55 radiation 1 4320 < th dose dependent rect. 16 8
188 400.59 radiation 1 4320 > th dose independent rect. 18 12
194 400.63 radiation 1 4320 < th dose dependent rect. 16 3
195 400.63 radiation 1 4320 < th dose dependent rect. 16 10
198 400.65 atmosphere 1015 43200 > th dose dependent rect. 1 1
201 400.68 radiation 1 4320 < th dose dependent sin 13 NA
203 400.70 atmosphere 1015 43200 < th dose independent rect. 8 3
209 400.75 wind 7 720 > th dose dependent rect. 19 21
242 401.02 atmosphere 1015 43200 > th dose independent rect. 9 6
243 401.02 wind 9 720 > th dose independent rect. 18 22
245 401.03 wind 1 43200 < th dose dependent rect. 2 1
260 401.11 atmosphere 1015 43200 < th dose independent rect. 9 7
263 401.13 radiation 1 43200 < th dose dependent rect. 8 10
264 401.14 wind 1 43200 < th dose independent sin 19 NA
286 401.24 radiation 1 14400 < th dose independent rect. 16 8
291 401.25 radiation 1 14400 < th dose independent rect. 16 6
294 401.26 radiation 1 14400 < th dose independent rect. 16 10
296 401.26 radiation 1 14400 < th dose dependent rect. 17 1
301 401.27 wind 1 43200 < th dose dependent rect. 9 3
303 401.28 wind 7 720 < th dose independent rect. 11 4
349 401.43 wind 1 43200 < th dose dependent rect. 2 6
351 401.45 wind 1 43200 > th dose independent sin 19 NA
362 401.49 wind 1 43200 > th dose independent rect. 5 1
371 401.51 atmosphere 1015 43200 > th dose independent rect. 1 11
381 401.55 atmosphere 1015 43200 < th dose independent rect. 11 2
400 401.61 atmosphere 1015 43200 < th dose independent rect. 1 11
419 401.67 atmosphere 1015 43200 > th dose independent rect. 11 2
427 401.69 atmosphere 1015 43200 > th dose independent rect. 1 16
442 401.73 wind 1 43200 > th dose independent rect. 2 4
451 401.74 wind 7 720 < th dose independent rect. 11 21
493 401.84 atmosphere 1015 43200 > th dose independent sin 2 NA
510 401.88 radiation 1 14400 < th dose independent sin 16 NA
513 401.88 temperature 25 43200 < th dose dependent rect. 21 1
525 401.90 wind 1 43200 > th dose independent rect. 2 6
558 401.95 radiation 1 14400 < th dose independent rect. 11 12
560 401.95 atmosphere 1015 43200 < th dose independent rect. 1 16
563 401.96 radiation 1 14400 < th dose independent rect. 11 10
569 401.97 radiation 1 14400 < th dose independent rect. 11 8
584 401.98 atmosphere 1010 14400 > th dose dependent rect. 11 8
598 401.99 atmosphere 1010 14400 > th dose dependent rect. 11 6
620 402.02 radiation 1 14400 < th dose independent rect. 13 10
625 402.02 temperature 20 14400 < th dose dependent rect. 3 1
626 402.02 atmosphere 1010 14400 > th dose dependent rect. 12 3
630 402.03 radiation 1 14400 < th dose independent rect. 13 8
643 402.04 radiation 1 14400 < th dose independent rect. 13 6
651 402.05 atmosphere 1015 43200 < th dose independent sin 2 NA
696 402.09 atmosphere 1010 14400 > th dose dependent rect. 14 1
748 402.16 atmosphere 1015 43200 > th dose independent rect. 24 3
754 402.16 atmosphere 1010 14400 > th dose dependent rect. 18 1
758 402.17 atmosphere 1015 43200 < th dose independent rect. 1 2
795 402.20 radiation 1 43200 > th dose independent rect. 10 7
866 402.27 radiation 40 43200 < th dose independent rect. 16 11
899 402.30 temperature 20 43200 > th dose independent rect. 2 16
900 402.30 temperature 20 43200 < th dose independent rect. 2 16
929 402.35 atmosphere 1015 43200 > th dose independent rect. 5 1
936 402.36 atmosphere 1015 43200 > th dose independent rect. 2 1
953 402.38 atmosphere 1015 43200 < th dose independent rect. 5 1
977 402.39 atmosphere 1010 14400 > th dose dependent sin 18 NA
988 402.40 temperature 20 43200 < th dose independent rect. 3 9