BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0108500 Os01g0108500|014-001-B07
         (306 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0108500  Conserved hypothetical protein                      526   e-150
Os01g0567200  Conserved hypothetical protein                      365   e-101
Os03g0629800  Conserved hypothetical protein                       96   5e-20
Os08g0195400  Conserved hypothetical protein                       85   6e-17
Os02g0265300  Conserved hypothetical protein                       84   9e-17
Os01g0780900  Conserved hypothetical protein                       75   6e-14

>Os01g0108500 Conserved hypothetical protein
          Length = 306

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/289 (92%), Positives = 267/289 (92%)

Query: 18  EIRRPVDESTEKAGSXXXXXXXXXXXQSGEAGSXXXXXXXXXXXPGCHCPDESTEKAGSL 77
           EIRRPVDESTEKAGS           QSGEAGS           PGCHCPDESTEKAGSL
Sbjct: 18  EIRRPVDESTEKAGSLRRRRRLHRRRQSGEAGSLRRRQLLRRRRPGCHCPDESTEKAGSL 77

Query: 78  WQCQWLRHRCPGGRCPVPRDGGGSFLRPASPGQAIAQSLLLVVLDCPLARWRRFCRCMLE 137
           WQCQWLRHRCPGGRCPVPRDGGGSFLRPASPGQAIAQSLLLVVLDCPLARWRRFCRCMLE
Sbjct: 78  WQCQWLRHRCPGGRCPVPRDGGGSFLRPASPGQAIAQSLLLVVLDCPLARWRRFCRCMLE 137

Query: 138 CFLCHGSISQVSQDFSPPFPHVDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAG 197
           CFLCHGSISQVSQDFSPPFPHVDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAG
Sbjct: 138 CFLCHGSISQVSQDFSPPFPHVDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAG 197

Query: 198 FVVRVELTLLRFNDELRGLLLLSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTP 257
           FVVRVELTLLRFNDELRGLLLLSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTP
Sbjct: 198 FVVRVELTLLRFNDELRGLLLLSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTP 257

Query: 258 KEAQGCIRRGIAAAPCRCAPSLQCGFITKFVALSAVSPFFRNGWFYASF 306
           KEAQGCIRRGIAAAPCRCAPSLQCGFITKFVALSAVSPFFRNGWFYASF
Sbjct: 258 KEAQGCIRRGIAAAPCRCAPSLQCGFITKFVALSAVSPFFRNGWFYASF 306



>Os01g0567200 Conserved hypothetical protein
          Length = 272

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/256 (84%), Positives = 222/256 (86%), Gaps = 1/256 (0%)

Query: 18  EIRRPVDESTEKAGSXXXXXXXXXXXQSGEAGSXXXXXXXXXXXPGCHCPDESTEKAGSL 77
           EIRRPVDESTEKAGS           + GEAGS           PGC  PDESTEKAGSL
Sbjct: 18  EIRRPVDESTEKAGSLRRRRLHRRR-RPGEAGSLRRCQLLRRRCPGCRRPDESTEKAGSL 76

Query: 78  WQCQWLRHRCPGGRCPVPRDGGGSFLRPASPGQAIAQSLLLVVLDCPLARWRRFCRCMLE 137
           WQCQWLR RCPGGR PVPRDGGGSFLRPASPGQA+A+SLLLVVLD  LARWRRFC+CMLE
Sbjct: 77  WQCQWLRRRCPGGRRPVPRDGGGSFLRPASPGQAVARSLLLVVLDSLLARWRRFCQCMLE 136

Query: 138 CFLCHGSISQVSQDFSPPFPHVDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAG 197
           CFL HGSISQVSQDFSPPF HVDPRRQQF+CHHSS+SVGLGIWMWAPSSSVFPTSSFHA 
Sbjct: 137 CFLYHGSISQVSQDFSPPFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHAR 196

Query: 198 FVVRVELTLLRFNDELRGLLLLSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTP 257
           FVVRVELTLLRFNDELRGLLLLSPVM PQNLRLSSKPPFCAVFVEATGW LPVCQACCTP
Sbjct: 197 FVVRVELTLLRFNDELRGLLLLSPVMPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTP 256

Query: 258 KEAQGCIRRGIAAAPC 273
           KEAQGCIRRGIAAAPC
Sbjct: 257 KEAQGCIRRGIAAAPC 272



>Os03g0629800 Conserved hypothetical protein
          Length = 99

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 50/64 (78%)

Query: 236 FCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAPCRCAPSLQCGFITKFVALSAVSP 295
           FCAVFVEATGW LPVC+ACCTPKEAQGCIR GI AAPCRCA SL CGF  K VAL   S 
Sbjct: 12  FCAVFVEATGWGLPVCRACCTPKEAQGCIRHGIIAAPCRCATSLLCGFNMKIVALVQFSV 71

Query: 296 FFRN 299
            ++ 
Sbjct: 72  HWKQ 75



>Os08g0195400 Conserved hypothetical protein
          Length = 283

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 61/114 (53%)

Query: 159 VDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAGFVVRVELTLLRFNDELRGLLL 218
           V P R+QFI     +S+  G W+W PS S F  S  HAG+ +RVEL LLRF  ELRG + 
Sbjct: 153 VVPSREQFIRQWLCSSLLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELRGEVW 212

Query: 219 LSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAP 272
           LSPV L        +        E     LPV QA C  KE QG  RRG AAAP
Sbjct: 213 LSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAAAP 266



>Os02g0265300 Conserved hypothetical protein
          Length = 251

 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 69/128 (53%)

Query: 163 RQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAGFVVRVELTLLRFNDELRGLLLLSPV 222
           R+QFI     +S+  G W+W PSSS+ P S  HAG  +RVEL LLRFN ELRG + LSPV
Sbjct: 103 REQFIRRWLCSSLHQGGWIWDPSSSLSPGSGIHAGCAIRVELKLLRFNGELRGEVWLSPV 162

Query: 223 MLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAPCRCAPSLQCG 282
            LP       +      F       L V QA C  KE QGC   G AAAPCR APS    
Sbjct: 163 KLPPKSTAQQQISNLCSFCGGDRRGLTVRQAVCMLKETQGCNCHGFAAAPCRFAPSALSS 222

Query: 283 FITKFVAL 290
           F   FV L
Sbjct: 223 FRRLFVFL 230



>Os01g0780900 Conserved hypothetical protein
          Length = 349

 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 164 QQFICHHSSASVGLGIWMWAPSSSV-FPTSSFHAGFVVRVELTLLRFNDELRGLLLLSPV 222
           Q+ IC HSSAS  L +   + SS + FP    H GFV+RVEL      DE RG  LLSPV
Sbjct: 204 QKLICSHSSASS-LKVGCSSDSSILLFPNRRNHVGFVIRVELGPP---DEPRGDPLLSPV 259

Query: 223 MLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAPCRCAPSLQCG 282
                     +      F   + W L VCQA CT  EAQG  RRG AA PCR AP     
Sbjct: 260 THTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPCRLAPFSDVR 319

Query: 283 FITKFVALSAVSPFF 297
              +    S+V+P F
Sbjct: 320 LFQEGCFRSSVNPPF 334



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,082,025
Number of extensions: 493335
Number of successful extensions: 1409
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 6
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)