Os03g0629800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0629800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.68 | 0.747 | 3.48 | -0.152 | 0.568 | 3.6 | -0.293 | 3.32 | 0.129 | 5.92 | 8.574 | 608 | -- | -- |
| 253.65 | 0.742 | 3.48 | -0.204 | 0.591 | 3.2 | -0.394 | -- | 0.092 | 5.58 | 8.8 | 582 | -- | -- |
| 252.81 | 0.741 | 3.48 | -0.157 | 0.566 | 3.63 | -- | 3.52 | 0.128 | 5.95 | 8.5 | 603 | -- | -- |
| 253.62 | 0.742 | 3.47 | -0.181 | 0.607 | 3.05 | -- | -- | 0.117 | 5.9 | 8.8 | 583 | -- | -- |
| 269.21 | 0.764 | 3.49 | -0.151 | -- | 3.56 | -- | 4.07 | 0.138 | -- | 8.6 | 582 | -- | -- |
| 288.03 | 0.796 | 3.49 | -0.463 | 0.476 | -- | 0.0678 | -- | 0.0251 | 5.38 | -- | -- | -- | -- |
| 288.04 | 0.795 | 3.49 | -0.463 | 0.476 | -- | -- | -- | 0.0247 | 5.36 | -- | -- | -- | -- |
| 265.85 | 0.759 | 3.46 | -0.114 | -- | 2.51 | -- | -- | 0.148 | -- | 8.7 | 940 | -- | -- |
| 254.12 | 0.742 | 3.46 | -- | 0.578 | 3.02 | -- | -- | 0.155 | 5.92 | 8.5 | 583 | -- | -- |
| 299.88 | 0.809 | 3.5 | -0.447 | -- | -- | -- | -- | 0.0365 | -- | -- | -- | -- | -- |
| 293.69 | 0.802 | 3.48 | -- | 0.469 | -- | -- | -- | 0.0763 | 5.39 | -- | -- | -- | -- |
| 266.41 | 0.76 | 3.46 | -- | -- | 2.49 | -- | -- | 0.178 | -- | 8.8 | 933 | -- | -- |
| 305.14 | 0.815 | 3.49 | -- | -- | -- | -- | -- | 0.0861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.37 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 4 |
| 2 | 248.37 | wind | 9 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 3 | 248.80 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 11 | 251.01 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 22 |
| 17 | 251.39 | wind | 7 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 53 | 253.64 | wind | 9 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 74 | 254.42 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 15 |
| 86 | 254.63 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 112 | 255.15 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 15 |
| 128 | 255.28 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 12 |
| 132 | 255.34 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 135 | 255.35 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 158 | 255.44 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 161 | 255.45 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 18 |
| 174 | 255.51 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 190 | 255.51 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 22 |
| 283 | 255.78 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 286 | 255.81 | wind | 9 | 720 | > th | dose independent | sin | 23 | NA |
| 309 | 255.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 327 | 256.00 | wind | 7 | 720 | < th | dose independent | rect. | 20 | 21 |
| 356 | 256.14 | wind | 9 | 720 | > th | dose dependent | no | NA | NA |
| 372 | 256.14 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 440 | 256.23 | wind | 9 | 720 | > th | dose dependent | sin | 23 | NA |
| 442 | 256.24 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 22 |
| 444 | 256.25 | wind | 9 | 720 | < th | dose independent | sin | 22 | NA |
| 470 | 256.35 | wind | 9 | 720 | > th | dose independent | sin | 8 | NA |
| 497 | 256.44 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 14 |
| 503 | 256.46 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 23 |
| 510 | 256.48 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 17 |
| 551 | 256.72 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 581 | 256.86 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 636 | 257.11 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 666 | 257.24 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 680 | 257.29 | wind | 9 | 720 | > th | dose dependent | sin | 8 | NA |
| 723 | 257.46 | wind | 7 | 720 | < th | dose independent | rect. | 3 | 22 |
| 751 | 257.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 753 | 257.57 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 755 | 257.60 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 797 | 257.69 | wind | 9 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 900 | 258.13 | wind | 9 | 720 | < th | dose independent | sin | 9 | NA |
| 962 | 258.40 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 15 |