Os01g0780900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0780900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.95 | 0.282 | 15.1 | 1.69 | 0.13 | -1.01 | 0.0702 | 0.811 | 0.889 | 6.27 | 0.356 | 1436 | -- | -- |
| 35.76 | 0.279 | 15.1 | 1.77 | 0.14 | -1.17 | 0.125 | -- | 0.886 | 6.22 | 0.17 | 1438 | -- | -- |
| 35.74 | 0.278 | 15.1 | 1.69 | 0.125 | -1.05 | -- | 0.581 | 0.881 | 6.02 | 0.2137 | 1437 | -- | -- |
| 35.74 | 0.278 | 15.1 | 1.78 | 0.133 | -1.18 | -- | -- | 0.888 | 5.68 | 0.1702 | 1440 | -- | -- |
| 36.6 | 0.282 | 15.1 | 1.7 | -- | -1.11 | -- | 0.425 | 0.886 | -- | 0.22 | 1439 | -- | -- |
| 52.02 | 0.338 | 15.1 | 2.06 | 0.134 | -- | 0.0836 | -- | 1.05 | 6.13 | -- | -- | -- | -- |
| 52.04 | 0.338 | 15.1 | 2.06 | 0.135 | -- | -- | -- | 1.05 | 6.04 | -- | -- | -- | -- |
| 36.57 | 0.282 | 15.1 | 1.79 | -- | -1.17 | -- | -- | 0.895 | -- | 0.17 | 1440 | -- | -- |
| 76.89 | 0.408 | 15.1 | -- | 0.113 | -1.38 | -- | -- | 0.871 | 5.07 | 0.006049 | 46078 | -- | -- |
| 52.98 | 0.34 | 15.1 | 2.07 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 164.05 | 0.599 | 15.1 | -- | 0.167 | -- | -- | -- | 0.822 | 5.42 | -- | -- | -- | -- |
| 75.37 | 0.404 | 15 | -- | -- | -1.44 | -- | -- | 0.789 | -- | 3.528e-06 | 47520 | -- | -- |
| 165.51 | 0.6 | 15.1 | -- | -- | -- | -- | -- | 0.826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 4 | 35.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 7 | 35.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 10 | 35.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 18 | 36.15 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 45 | 36.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 47 | 36.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 48 | 36.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 50 | 36.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 58 | 36.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 59 | 36.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 62 | 36.36 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 91 | 36.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 95 | 36.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 101 | 36.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 114 | 36.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 126 | 36.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 143 | 36.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 144 | 36.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 146 | 36.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 155 | 36.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 190 | 36.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 192 | 36.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 240 | 37.00 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 249 | 37.02 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 340 | 37.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 342 | 37.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 399 | 37.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 400 | 37.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 404 | 37.61 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 406 | 37.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 407 | 37.62 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 412 | 37.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 414 | 37.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 415 | 37.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 417 | 37.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 450 | 37.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 454 | 37.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 495 | 37.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 501 | 37.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 503 | 37.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 534 | 37.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 563 | 37.82 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 582 | 37.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 586 | 37.85 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 630 | 37.87 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 631 | 37.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 635 | 37.88 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 688 | 37.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 696 | 37.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 717 | 37.94 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 722 | 37.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 730 | 37.97 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 745 | 37.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 815 | 38.07 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 868 | 38.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 906 | 38.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 908 | 38.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 924 | 38.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 963 | 38.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 970 | 38.31 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |