Os08g0195400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0195400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.57 | 0.445 | 12.7 | -0.753 | 0.755 | 1.52 | -0.0671 | -3.19 | 0.142 | 16.6 | 23.11 | 1221 | -- | -- |
| 94.89 | 0.454 | 12.6 | 0.133 | 0.713 | 1.34 | -0.0121 | -- | 0.367 | 16 | 22.33 | 1073 | -- | -- |
| 89.55 | 0.441 | 12.7 | -0.735 | 0.749 | 1.55 | -- | -3.17 | 0.142 | 16.4 | 23.04 | 1187 | -- | -- |
| 94.86 | 0.454 | 12.6 | 0.143 | 0.706 | 1.34 | -- | -- | 0.376 | 16.1 | 22.26 | 1067 | -- | -- |
| 100.58 | 0.467 | 12.6 | -0.337 | -- | 1.69 | -- | -2.91 | 0.272 | -- | 22.56 | 532 | -- | -- |
| 146.18 | 0.567 | 12.5 | 0.55 | 0.632 | -- | 0.0459 | -- | 0.633 | 17.7 | -- | -- | -- | -- |
| 146.19 | 0.566 | 12.5 | 0.55 | 0.632 | -- | -- | -- | 0.633 | 17.7 | -- | -- | -- | -- |
| 104.29 | 0.476 | 12.6 | 0.18 | -- | 1.54 | -- | -- | 0.357 | -- | 21.15 | 521 | -- | -- |
| 95.33 | 0.455 | 12.6 | -- | 0.716 | 1.37 | -- | -- | 0.34 | 16.1 | 21.52 | 1091 | -- | -- |
| 166.94 | 0.604 | 12.5 | 0.53 | -- | -- | -- | -- | 0.618 | -- | -- | -- | -- | -- |
| 154.16 | 0.581 | 12.5 | -- | 0.624 | -- | -- | -- | 0.572 | 17.7 | -- | -- | -- | -- |
| 105.08 | 0.477 | 12.6 | -- | -- | 1.58 | -- | -- | 0.334 | -- | 21 | 524 | -- | -- |
| 174.35 | 0.616 | 12.5 | -- | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 3 | 88.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 5 | 88.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 38 | 89.49 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 41 | 89.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 139 | 90.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 151 | 90.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 256 | 91.00 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 91.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 339 | 91.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 355 | 91.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 369 | 91.78 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 401 | 91.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 477 | 92.43 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 480 | 92.44 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 483 | 92.45 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 484 | 92.45 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 545 | 92.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 580 | 92.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 594 | 92.88 | wind | 7 | 43200 | > th | dose independent | sin | 23 | NA |
| 597 | 92.89 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 865 | 93.71 | wind | 7 | 43200 | > th | dose dependent | sin | 20 | NA |
| 871 | 93.72 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 884 | 93.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 891 | 93.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 20 |