BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0195400 Os08g0195400|AK070464
(283 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0195400 Conserved hypothetical protein 431 e-121
Os02g0265300 Conserved hypothetical protein 168 4e-42
Os07g0610650 101 8e-22
Os01g0108500 Conserved hypothetical protein 85 5e-17
Os01g0567200 Conserved hypothetical protein 84 9e-17
Os03g0299700 Conserved hypothetical protein 82 4e-16
Os07g0162450 Conserved hypothetical protein 80 2e-15
Os01g0780900 Conserved hypothetical protein 76 3e-14
Os07g0442800 Conserved hypothetical protein 70 1e-12
>Os08g0195400 Conserved hypothetical protein
Length = 283
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/283 (80%), Positives = 228/283 (80%)
Query: 1 MVAGVIDGVGVGRWRAVDVSWXXXXXXXXXXXXXXXXXXXDMLDLKLEVMGRCLVLPPPW 60
MVAGVIDGVGVGRWRAVDVSW DMLDLKLEVMGRCLVLPPPW
Sbjct: 1 MVAGVIDGVGVGRWRAVDVSWQRRGLVVVVVGVLQLVEVEDMLDLKLEVMGRCLVLPPPW 60
Query: 61 SXXXXXXXXXXXYEKVYCLWSLSLCAGCGLGWWWCFVPLASXXXXXXXXXXXXXXXPATE 120
S YEKVYCLWSLSLCAGCGLGWWWCFVPLAS PATE
Sbjct: 61 SLLLRMEVLLVLYEKVYCLWSLSLCAGCGLGWWWCFVPLASVRDDGVVAGVGDVVVPATE 120
Query: 121 LAEALLRPPPSSGSQXXXXXXXXXXRSFPTLCVVPSREQFIRQWLCSSLLQGGWIWGPSP 180
LAEALLRPPPSSGSQ RSFPTLCVVPSREQFIRQWLCSSLLQGGWIWGPSP
Sbjct: 121 LAEALLRPPPSSGSQLVLLLHLLLVRSFPTLCVVPSREQFIRQWLCSSLLQGGWIWGPSP 180
Query: 181 SSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRR 240
SSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRR
Sbjct: 181 SSFLGSCIHAGWAIRVELMLLRFKGELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRR 240
Query: 241 GLPVRQAVCMSKETQGSNRRGFAAAPVDSRLLRCLVSGGCLYS 283
GLPVRQAVCMSKETQGSNRRGFAAAPVDSRLLRCLVSGGCLYS
Sbjct: 241 GLPVRQAVCMSKETQGSNRRGFAAAPVDSRLLRCLVSGGCLYS 283
>Os02g0265300 Conserved hypothetical protein
Length = 251
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 96/121 (79%), Gaps = 3/121 (2%)
Query: 146 RSFPTLCVVPSREQFIRQWLCSSLLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKG 205
RS PTLC REQFIR+WLCSSL QGGWIW PS S GS IHAG AIRVEL LLRF G
Sbjct: 95 RSSPTLCY---REQFIRRWLCSSLHQGGWIWDPSSSLSPGSGIHAGCAIRVELKLLRFNG 151
Query: 206 ELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAAA 265
ELRGEVWLSPVKL PKSTAQQQISNLC C G RRGL VRQAVCM KETQG N GFAAA
Sbjct: 152 ELRGEVWLSPVKLPPKSTAQQQISNLCSFCGGDRRGLTVRQAVCMLKETQGCNCHGFAAA 211
Query: 266 P 266
P
Sbjct: 212 P 212
>Os07g0610650
Length = 170
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 51/62 (82%)
Query: 205 GELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAA 264
+ GEVWLSPVK TPKSTAQQQISNLC EG RRGL VRQAVCM KETQG NRRGFAA
Sbjct: 70 NSIHGEVWLSPVKPTPKSTAQQQISNLCNFYEGDRRGLLVRQAVCMLKETQGCNRRGFAA 129
Query: 265 AP 266
AP
Sbjct: 130 AP 131
>Os01g0108500 Conserved hypothetical protein
Length = 306
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 61/114 (53%)
Query: 153 VVPSREQFIRQWLCSSLLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELRGEVW 212
V P R+QFI +S+ G W+W PS S F S HAG+ +RVEL LLRF ELRG +
Sbjct: 159 VDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAGFVVRVELTLLRFNDELRGLLL 218
Query: 213 LSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAAAP 266
LSPV L + E LPV QA C KE QG RRG AAAP
Sbjct: 219 LSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTPKEAQGCIRRGIAAAP 272
>Os01g0567200 Conserved hypothetical protein
Length = 272
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 149 PTLCVVPSREQFIRQWLCSSLLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELR 208
P V P R+QF+ SS+ G W+W PS S F S HA + +RVEL LLRF ELR
Sbjct: 154 PFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARFVVRVELTLLRFNDELR 213
Query: 209 GEVWLSPVKLTPKSTAQQQISNLCR-LCEGVRRGLPVRQAVCMSKETQGSNRRGFAAAP 266
G + LSPV + P++ C E GLPV QA C KE QG RRG AAAP
Sbjct: 214 GLLLLSPV-MPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAP 271
>Os03g0299700 Conserved hypothetical protein
Length = 99
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 174 WIWGPSPSSFL---GSCIHAGWAIRVEL-MLLRFKGELRGEVWLSPVKLTPKSTAQQQIS 229
W + S FL + IH G IRVE +LLR L G LSPV TPKSTAQ+Q S
Sbjct: 2 WTTCSTESCFLLLQNNSIHTGSIIRVEQSLLLRSNERLHGTNLLSPVIPTPKSTAQKQTS 61
Query: 230 NLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAA 264
+LCR R LPV QAVCMS E +G NRRGFAA
Sbjct: 62 DLCRFRGDSCRSLPVCQAVCMSMEAKGFNRRGFAA 96
>Os07g0162450 Conserved hypothetical protein
Length = 149
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 185 GSCIHAGWAIRVELMLLRFKGE-LRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRRGLP 243
S IHAG IRVE LL E L G LSPV TPKSTA+QQ S+LCR LP
Sbjct: 16 NSSIHAGSIIRVEQSLLLISNERLYGTNLLSPVIPTPKSTARQQTSDLCRFRGDSCSSLP 75
Query: 244 VRQAVCMSKETQGSNRRGFAAAPV--DSRLLRCLV 276
V QAVCMS E +G NRRGFAA +S LL C +
Sbjct: 76 VCQAVCMSMEAKGFNRRGFAAELCRSNSLLLFCFI 110
>Os01g0780900 Conserved hypothetical protein
Length = 349
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 189 HAGWAIRVELMLLRFKGELRGEVWLSPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAV 248
H G+ IRVEL E RG+ LSPV TPKSTAQ Q S LCR G R GL V QA
Sbjct: 235 HVGFVIRVELGPPD---EPRGDPLLSPVTHTPKSTAQHQTSVLCRFRGGSRWGLTVCQAD 291
Query: 249 CMSKETQGSNRRGFAAAP 266
C S E QGS+RRGFAA P
Sbjct: 292 CTSFEAQGSSRRGFAADP 309
>Os07g0442800 Conserved hypothetical protein
Length = 70
Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 44/69 (63%)
Query: 214 SPVKLTPKSTAQQQISNLCRLCEGVRRGLPVRQAVCMSKETQGSNRRGFAAAPVDSRLLR 273
SPVKLTPKST QQQ NLCR G +RGL V QAVC S + G +RRG AA PVD
Sbjct: 1 SPVKLTPKSTTQQQTFNLCRSRGGNQRGLSVCQAVCTSMKAHGCSRRGNAATPVDLIHYH 60
Query: 274 CLVSGGCLY 282
C+ + G +
Sbjct: 61 CMATSGICF 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,382,201
Number of extensions: 339807
Number of successful extensions: 771
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 10
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)