Os04g0297800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0297800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.95 | 0.282 | 14.3 | 1.13 | 0.837 | 0.917 | 0.411 | 0.126 | 0.735 | 0.246 | 21.7 | 3142 | -- | -- |
| 35.93 | 0.279 | 14.3 | 1.11 | 0.836 | 0.896 | 0.412 | -- | 0.725 | 0.242 | 21.75 | 3154 | -- | -- |
| 36.65 | 0.282 | 14.3 | 1.12 | 0.836 | 0.918 | -- | 0.128 | 0.726 | 0.204 | 21.7 | 3159 | -- | -- |
| 36.64 | 0.282 | 14.3 | 1.09 | 0.836 | 0.892 | -- | -- | 0.725 | 0.196 | 21.73 | 3150 | -- | -- |
| 68.21 | 0.385 | 14.3 | 0.779 | -- | 1.25 | -- | -1.56 | 0.605 | -- | 24.9 | 2374 | -- | -- |
| 58.56 | 0.359 | 14.2 | 1.59 | 0.86 | -- | 0.363 | -- | 1.03 | 0.263 | -- | -- | -- | -- |
| 59.12 | 0.36 | 14.2 | 1.58 | 0.859 | -- | -- | -- | 1.03 | 0.224 | -- | -- | -- | -- |
| 70.67 | 0.392 | 14.2 | 1.21 | -- | 1.11 | -- | -- | 0.718 | -- | 24.8 | 2381 | -- | -- |
| 42.95 | 0.305 | 14.3 | -- | 0.839 | 1.53 | -- | -- | 0.539 | 0.194 | 17.4 | 47520 | -- | -- |
| 105.54 | 0.48 | 14.2 | 1.61 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 124.98 | 0.523 | 14.2 | -- | 0.881 | -- | -- | -- | 0.853 | 0.32 | -- | -- | -- | -- |
| 86.92 | 0.434 | 14.3 | -- | -- | 1.5 | -- | -- | 0.517 | -- | 18.13 | 47520 | -- | -- |
| 173.82 | 0.615 | 14.2 | -- | -- | -- | -- | -- | 0.863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.62 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 3 | 35.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 5 | 36.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 8 | 36.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 13 | 36.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 92 | 37.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 109 | 37.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 132 | 37.39 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 143 | 37.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 208 | 37.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 209 | 37.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 236 | 37.68 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 243 | 37.69 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 261 | 37.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 276 | 37.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 344 | 37.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 348 | 37.88 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 366 | 37.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 390 | 37.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 397 | 37.96 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 432 | 38.02 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 441 | 38.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 453 | 38.04 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 455 | 38.04 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 475 | 38.05 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 509 | 38.09 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 517 | 38.11 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 521 | 38.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 541 | 38.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 555 | 38.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 586 | 38.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 653 | 38.21 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 727 | 38.27 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 775 | 38.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 805 | 38.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 843 | 38.39 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 850 | 38.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 935 | 38.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 988 | 38.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |